RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 PRDX4Q13162 271 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 ESPL1Q14674 2120 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 CDCP2Q5VXM1 449 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 LGI3Q8N145 548 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 LRTM2Q8N967 370 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 CCDC71LQ8N9Z2 235 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 SLAMF9Q96A28 289 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 NIT2Q9NQR4 276 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 TNRC6AQ8NDV7 1962 aaKnown RBP11.33□□□□□ -0.6
LDLR-203ENST00000535915 AGPAT2O15120 278 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 ACAA1P09110 424 aaPredicted RBP11.33□□□□□ -0.6
LDLR-203ENST00000535915 MUC1P15941 1255 aaPredicted RBP11.33□□□□□ -0.6
LDLR-203ENST00000535915 ITGA3P26006 1051 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 DUSP1P28562 367 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 GPM6AP51674 278 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 UCP3P55916 312 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 DAZAP2Q15038 168 aaPredicted RBP11.33□□□□□ -0.6
LDLR-203ENST00000535915 OR1C1Q15619 314 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 DBX2Q6ZNG2 339 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 MRPL21Q7Z2W9 205 aaKnown RBP11.33□□□□□ -0.6
LDLR-203ENST00000535915 ERGIC1Q969X5 290 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 MSI2Q96DH6 328 aaKnown RBP11.33□□□□□ -0.6
LDLR-203ENST00000535915 C18orf12Q96KH6 178 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 ZNF251Q9BRH9 671 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 REPIN1Q9BWE0 567 aaKnown RBP11.33□□□□□ -0.6
LDLR-203ENST00000535915 SEC11CQ9BY50 192 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 SPRY4Q9C004 299 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 PLA2G3Q9NZ20 509 aa11.33□□□□□ -0.6
LDLR-203ENST00000535915 FAM186AA6NE01 2351 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 H7C1Q1 480 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 PPYP01298 95 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 FBXW12Q6X9E4 464 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 MEX3BQ6ZN04 569 aaKnown RBP11.32□□□□□ -0.6
LDLR-203ENST00000535915 LINC00696Q6ZRV3 163 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 OR52M1Q8NGK5 317 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 EXTL1Q92935 676 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 RSRP1Q9BUV0 290 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 TTTY12Q9BZ98 90 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 ABI3Q9P2A4 366 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 RPL36A-HNRNPH2H7BZ11 118 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 PMELP40967 661 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 Q6ZRG5 221 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 NRIP2Q9BQI9 281 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 PLA2G2EQ9NZK7 142 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 CRIM1Q9NZV1 1036 aa11.32□□□□□ -0.6
LDLR-203ENST00000535915 ZNF503-AS2A6NEH8 195 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 ZNF883P0CG24 379 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 ID4P47928 161 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 NOVA1P51513 510 aaKnown RBP11.31□□□□□ -0.6
LDLR-203ENST00000535915 PLGLB1Q02325 96 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 ZDHHC23Q8IYP9 409 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 UBAC2Q8NBM4 344 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 TP53RKQ96S44 253 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 PARP12Q9H0J9 701 aaKnown RBP11.31□□□□□ -0.6
LDLR-203ENST00000535915 PARP11Q9NR21 331 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 NCOR1O75376 2440 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 RNASEK-C17orf49H0YIS7 233 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 SMIM6P0DI80 62 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 F2RL1P55085 397 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 AVPI1Q5T686 147 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 TMEM164Q5U3C3 297 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 DEFB123Q8N688 67 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 SLC35G3Q8N808 338 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 HPSE2Q8WWQ2 592 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 APOBEC3DQ96AK3 386 aaPredicted RBP11.31□□□□□ -0.6
LDLR-203ENST00000535915 BSCL2Q96G97 398 aaPredicted RBP11.31□□□□□ -0.6
LDLR-203ENST00000535915 FGF23Q9GZV9 251 aaPredicted RBP11.31□□□□□ -0.6
LDLR-203ENST00000535915 ZFP57Q9NU63 452 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 FAM86C1Q9NVL1 165 aa11.31□□□□□ -0.6
LDLR-203ENST00000535915 RCC2Q9P258 522 aaKnown RBP11.31□□□□□ -0.6
LDLR-203ENST00000535915 C3orf85A0A1B0GTC6 90 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 HSPB6O14558 160 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 ST8SIA3O43173 380 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 CRYBA1P05813 215 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 RAB1AP62820 205 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 CEACAM21Q3KPI0 293 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 DCAF10Q5QP82 559 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 BTNL8Q6UX41 500 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 C5orf24Q7Z6I8 188 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 Q8NFD4 153 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 APH1AQ96BI3 265 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 GPR87Q9BY21 358 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 LNP1A1A4G5 178 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM90A10PA6NDY2 464 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM90A18PA6NE21 464 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM90A16PA6NEW6 464 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM90A20PA6NIJ5 464 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM90A8PA6NJQ4 464 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM90A7PA6NKC0 464 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM90A22PA8MWA6 464 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM90A12PA8MX19 464 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM90A5PA8MXJ8 464 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM90A23PA8MXZ1 464 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 ZNF732B4DXR9 585 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 MPPED1O15442 326 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 GPR137BO60478 399 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM90A15PP0C7V4 464 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM90A13PP0C7W8 464 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM90A14PP0C7W9 464 aa11.3□□□□□ -0.6
LDLR-203ENST00000535915 FAM90A24PP0C7X0 464 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms