RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 MAS1P04201 325 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 ZNF728P0DKX0 622 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 P2RX3P56373 397 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 EDDM3BP56851 147 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 GUCA2AQ02747 115 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 BAMBIQ13145 260 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 IL13RA2Q14627 380 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 RSU1Q15404 277 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 PIGYQ3MUY2 71 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 RBMS3Q6XE24 437 aaKnown RBP10.59□□□□□ -0.71
VPS28-216ENST00000533806 PDZD9Q8IXQ8 264 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 PNKDQ8N490 385 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 TPRX1Q8N7U7 411 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 OR4D6Q8NGJ1 314 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 PHYHIPQ92561 330 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 CORO2AQ92828 525 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 UFD1Q92890 307 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 COQ2Q96H96 371 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 CCDC90BQ9GZT6 254 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 NCOR1P1Q9H4R4 102 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 Q9H521 79 aa10.59□□□□□ -0.71
VPS28-216ENST00000533806 A0A1W2PP11 408 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 hADV38S2A0JD32 116 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 MEGF11A6BM72 1044 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 NPFFO15130 113 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 ZNF780AO75290 641 aaPredicted RBP10.58□□□□□ -0.72
VPS28-216ENST00000533806 HTR3BO95264 441 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 RNASE1P07998 156 aaKnown RBP10.58□□□□□ -0.72
VPS28-216ENST00000533806 MELTFP08582 738 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 CGB3P0DN86 165 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 CGB7P0DN87 165 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 SRMP19623 302 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 GLIPR1P48060 266 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 RBM11P57052 281 aaKnown RBP10.58□□□□□ -0.72
VPS28-216ENST00000533806 RPS25P62851 125 aaKnown RBP10.58□□□□□ -0.72
VPS28-216ENST00000533806 AESQ08117 197 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 EDDM3AQ14507 147 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 SSX1Q16384 188 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 MIDNQ504T8 468 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 C1orf100Q5SVJ3 147 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 CEACAM19Q7Z692 300 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 LDLRAD3Q86YD5 345 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 OSR2Q8N2R0 312 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 NKAIN3Q8N8D7 197 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 PPP1R35Q8TAP8 253 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 TMEM203Q969S6 136 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 MUL1Q969V5 352 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 UQCC2Q9BRT2 126 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 FAM192AQ9GZU8 254 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 PPA2Q9H2U2 334 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 HEXA-AS1Q9H8Q6 139 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 ZMAT3Q9HA38 289 aaKnown RBP10.58□□□□□ -0.72
VPS28-216ENST00000533806 ING4Q9UNL4 249 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 ST3GAL6Q9Y274 331 aa10.58□□□□□ -0.72
VPS28-216ENST00000533806 MEX3AA1L020 520 aaKnown RBP10.57□□□□□ -0.72
VPS28-216ENST00000533806 HOXA3O43365 443 aaPredicted RBP10.57□□□□□ -0.72
VPS28-216ENST00000533806 HSMCR30P0CW71 290 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 IGHV1-8P0DP01 117 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 ZNF44P15621 663 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 EEF1B2P24534 225 aaKnown RBP10.57□□□□□ -0.72
VPS28-216ENST00000533806 PSMA1P25786 263 aaKnown RBP10.57□□□□□ -0.72
VPS28-216ENST00000533806 SAA4P35542 130 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 IER3P46695 156 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 COMPP49747 757 aaPredicted RBP10.57□□□□□ -0.72
VPS28-216ENST00000533806 FABP5Q01469 135 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 SCN1BQ07699 218 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 TRAM1Q15629 374 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 UBE2UQ5VVX9 321 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 CD200R1LQ6Q8B3 271 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 GLIPR1L1Q6UWM5 242 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 ZNF367Q7RTV3 350 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 SPARTQ8N0X7 666 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 JAGN1Q8N5M9 183 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 TMEM86BQ8N661 226 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 MRPS24Q96EL2 167 aaKnown RBP10.57□□□□□ -0.72
VPS28-216ENST00000533806 ZNF714Q96N38 554 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 DUX5Q96PT3 197 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 NR1H4Q96RI1 486 aaPredicted RBP10.57□□□□□ -0.72
VPS28-216ENST00000533806 GFI1Q99684 422 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 MRPS28Q9Y2Q9 187 aaKnown RBP10.57□□□□□ -0.72
VPS28-216ENST00000533806 UBE2J1Q9Y385 318 aaPredicted RBP10.57□□□□□ -0.72
VPS28-216ENST00000533806 LRRC42Q9Y546 428 aa10.57□□□□□ -0.72
VPS28-216ENST00000533806 hCG_1809904A0A1W2PP81 198 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 A0A1W2PPE2 198 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 A0A1W2PR64 198 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 A0A1W2PRV1 198 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 ODAMA1E959 279 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 TMEM89A2RUT3 159 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 FAM90A8PA6NJQ4 464 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 GEMIN2O14893 280 aaKnown RBP10.56□□□□□ -0.72
VPS28-216ENST00000533806 MMP23AO75900 390 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 GTF2F2P13984 249 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 GABRA5P31644 462 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 GPR176Q14439 515 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 SLC22A6Q4U2R8 563 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 HSD17B12Q53GQ0 312 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 RSBN1Q5VWQ0 802 aaPredicted RBP10.56□□□□□ -0.72
VPS28-216ENST00000533806 LINC00596Q86U02 117 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 TMEM104Q8NE00 496 aa10.56□□□□□ -0.72
VPS28-216ENST00000533806 OR11H6Q8NGC7 330 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms