RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 E7EQL1 145 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 M0R233 179 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 AMY2AP04746 511 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 IFNA6P05013 189 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 FCER2P06734 321 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 H2AFB2P0C5Z0 115 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 GLRA1P23415 457 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 HRH1P35367 487 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 KRTAP10-9P60411 292 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 OR52W1Q6IF63 320 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 BPIFB2Q8N4F0 458 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 ARRDC1Q8N5I2 433 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 OR51S1Q8NGJ8 323 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 TINAGL1Q9GZM7 467 aaPredicted RBP17.87■□□□□ 0.45
VPS28-212ENST00000530836 C20orf85Q9H1P6 137 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 PLEKHF2Q9H8W4 249 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 SEBOXQ9HB31 216 aaPredicted RBP17.87■□□□□ 0.45
VPS28-212ENST00000530836 TREM2Q9NZC2 230 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 ZNF581Q9P0T4 197 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 IL36RNQ9UBH0 155 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 APCP25054 2843 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 ABCA12Q86UK0 2595 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 IGHV3-64DA0A0J9YX35 117 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 UBE2QL1A1L167 161 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 C17orf100A8MU93 164 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 B9A039 149 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 M0QYG6 137 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 KNG1P01042 644 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 FCGR3AP08637 254 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 ZNF44P15621 663 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 TNFRSF1AP19438 455 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 MDH2P40926 338 aaKnown RBP17.87■□□□□ 0.45
VPS28-212ENST00000530836 PDCD1Q15116 288 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 TATDN3Q17R31 274 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 FAM209AQ5JX71 171 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 Q6P435 159 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 ACP7Q6ZNF0 438 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 ZNF826PQ6ZT77 177 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 SUMF2Q8NBJ7 301 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 OR5AP2Q8NGF4 316 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 OR5H2Q8NGV7 314 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 CHAC2Q8WUX2 184 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 PPP1R14BQ96C90 147 aa17.87■□□□□ 0.45
VPS28-212ENST00000530836 HRNRQ86YZ3 2850 aaPredicted RBP17.86■□□□□ 0.45
VPS28-212ENST00000530836 ITPR2Q14571 2701 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 SRRM5B3KS81 715 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 H7C1Q1 480 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 DUSP1P28562 367 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 OR3A3P47888 321 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 TESK1Q15569 626 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 AGAP6Q5VW22 663 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 SHEQ5VZ18 495 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 TMEM17Q86X19 198 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 LILRB1Q8NHL6 650 aaPredicted RBP17.86■□□□□ 0.45
VPS28-212ENST00000530836 LRRC29Q8WV35 223 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 ITLN1Q8WWA0 313 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 DHRS9Q9BPW9 319 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 DPCDQ9BVM2 203 aaPredicted RBP17.86■□□□□ 0.45
VPS28-212ENST00000530836 EGLN1Q9GZT9 426 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 MS4A5Q9H3V2 200 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 FBXO9Q9UK97 447 aaPredicted RBP17.86■□□□□ 0.45
VPS28-212ENST00000530836 NPTNQ9Y639 398 aa17.86■□□□□ 0.45
VPS28-212ENST00000530836 IFNL4K9M1U5 179 aa17.85■□□□□ 0.45
VPS28-212ENST00000530836 PRAF2O60831 178 aa17.85■□□□□ 0.45
VPS28-212ENST00000530836 PEX14O75381 377 aa17.85■□□□□ 0.45
VPS28-212ENST00000530836 ZNF735P0CB33 412 aa17.85■□□□□ 0.45
VPS28-212ENST00000530836 LMO1P25800 156 aa17.85■□□□□ 0.45
VPS28-212ENST00000530836 MICBQ29980 383 aa17.85■□□□□ 0.45
VPS28-212ENST00000530836 CHRFAM7AQ494W8 412 aa17.85■□□□□ 0.45
VPS28-212ENST00000530836 IDO2Q6ZQW0 420 aa17.85■□□□□ 0.45
VPS28-212ENST00000530836 Q6ZS49 121 aa17.85■□□□□ 0.45
VPS28-212ENST00000530836 Q8TCH9 128 aa17.85■□□□□ 0.45
VPS28-212ENST00000530836 NEK7Q8TDX7 302 aa17.85■□□□□ 0.45
VPS28-212ENST00000530836 GINS4Q9BRT9 223 aa17.85■□□□□ 0.45
VPS28-212ENST00000530836 CISD1Q9NZ45 108 aaKnown RBP17.85■□□□□ 0.45
VPS28-212ENST00000530836 ZNF230Q9UIE0 474 aaPredicted RBP17.85■□□□□ 0.45
VPS28-212ENST00000530836 TRAV6A0A075B6T7 132 aa17.84■□□□□ 0.45
VPS28-212ENST00000530836 TRAV24A0A0B4J272 114 aa17.84■□□□□ 0.45
VPS28-212ENST00000530836 OR2H2O95918 312 aa17.84■□□□□ 0.45
VPS28-212ENST00000530836 MECP2P51608 486 aaKnown RBP17.84■□□□□ 0.45
VPS28-212ENST00000530836 ZNF672Q499Z4 452 aaPredicted RBP17.84■□□□□ 0.45
VPS28-212ENST00000530836 BRICD5Q6PL45 260 aa17.84■□□□□ 0.45
VPS28-212ENST00000530836 OR11L1Q8NGX0 322 aa17.84■□□□□ 0.45
VPS28-212ENST00000530836 SLC6A7Q99884 636 aa17.84■□□□□ 0.45
VPS28-212ENST00000530836 HDHD3Q9BSH5 251 aaPredicted RBP17.84■□□□□ 0.45
VPS28-212ENST00000530836 ZNF286AQ9HBT8 521 aa17.84■□□□□ 0.45
VPS28-212ENST00000530836 CHMP1AQ9HD42 196 aaPredicted RBP17.84■□□□□ 0.45
VPS28-212ENST00000530836 ETAA1Q9NY74 926 aa17.84■□□□□ 0.45
VPS28-212ENST00000530836 ANXA10Q9UJ72 324 aa17.84■□□□□ 0.45
VPS28-212ENST00000530836 PLCE1Q9P212 2302 aa17.83■□□□□ 0.45
VPS28-212ENST00000530836 TRBV6-6A0A0A6YYG2 114 aa17.83■□□□□ 0.45
VPS28-212ENST00000530836 HS3ST1O14792 307 aa17.83■□□□□ 0.45
VPS28-212ENST00000530836 HAND1O96004 215 aa17.83■□□□□ 0.45
VPS28-212ENST00000530836 NAPSAO96009 420 aa17.83■□□□□ 0.45
VPS28-212ENST00000530836 PMP2P02689 132 aa17.83■□□□□ 0.45
VPS28-212ENST00000530836 ARPC4P59998 168 aa17.83■□□□□ 0.45
VPS28-212ENST00000530836 GRK1Q15835 563 aa17.83■□□□□ 0.45
VPS28-212ENST00000530836 MOGAT3Q86VF5 341 aa17.83■□□□□ 0.45
VPS28-212ENST00000530836 HPS1Q92902 700 aa17.83■□□□□ 0.45
VPS28-212ENST00000530836 SLC33A1O00400 549 aaPredicted RBP17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms