RNA–Protein interactions for RNA: ENST00000505226.1

UBE3D-206, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 3,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-206ENST00000505226 TAGLN2P37802 199 aaKnown RBP10.25□□□□□ -0.77
UBE3D-206ENST00000505226 DLK1P80370 383 aa10.25□□□□□ -0.77
UBE3D-206ENST00000505226 TMEM217Q8N7C4 229 aa10.25□□□□□ -0.77
UBE3D-206ENST00000505226 OR5C1Q8NGR4 320 aa10.25□□□□□ -0.77
UBE3D-206ENST00000505226 NAT6Q93015 286 aa10.25□□□□□ -0.77
UBE3D-206ENST00000505226 SYT3Q9BQG1 590 aa10.25□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF286AQ9HBT8 521 aa10.25□□□□□ -0.77
UBE3D-206ENST00000505226 SLC7A10Q9NS82 523 aa10.25□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF587BE7ETH6 402 aa10.25□□□□□ -0.77
UBE3D-206ENST00000505226 CDX1P47902 265 aaPredicted RBP10.25□□□□□ -0.77
UBE3D-206ENST00000505226 MRPS34P82930 218 aaKnown RBP10.25□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF92Q03936 586 aa10.25□□□□□ -0.77
UBE3D-206ENST00000505226 TBC1D26Q86UD7 250 aa10.25□□□□□ -0.77
UBE3D-206ENST00000505226 MAML2Q8IZL2 1156 aaPredicted RBP10.25□□□□□ -0.77
UBE3D-206ENST00000505226 PLPPR1Q8TBJ4 325 aa10.25□□□□□ -0.77
UBE3D-206ENST00000505226 BCO1Q9HAY6 547 aa10.25□□□□□ -0.77
UBE3D-206ENST00000505226 CRLF2Q9HC73 371 aa10.25□□□□□ -0.77
UBE3D-206ENST00000505226 SLC7A11Q9UPY5 501 aa10.25□□□□□ -0.77
UBE3D-206ENST00000505226 PITX3O75364 302 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 NKX2-1P43699 371 aaPredicted RBP10.24□□□□□ -0.77
UBE3D-206ENST00000505226 DYNLT3P51808 116 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 GUSBP11Q6P575 273 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 SELENOHQ8IZQ5 122 aaKnown RBP10.24□□□□□ -0.77
UBE3D-206ENST00000505226 OR1F12Q8NHA8 337 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 OR14L1PQ8NHC6 308 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 SIGLEC12Q96PQ1 595 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 IGKV1D-13A0A0B4J2D9 117 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 ADAM20O43506 726 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 PDCD6O75340 191 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 IGKV1-13P0DP09 117 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 B4GALT1P15291 398 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF32P17041 273 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF818PQ6ZRF7 136 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 LYRM2Q9NU23 88 aaPredicted RBP10.24□□□□□ -0.77
UBE3D-206ENST00000505226 HIST1H2BKO60814 126 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 SCAF4O95104 1147 aaKnown RBP10.24□□□□□ -0.77
UBE3D-206ENST00000505226 HIST1H2BJP06899 126 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 TCN2P20062 427 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 HIST1H2BOP23527 126 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 HIST1H2BBP33778 126 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 RBM11P57052 281 aaKnown RBP10.24□□□□□ -0.77
UBE3D-206ENST00000505226 HIST1H2BDP58876 126 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 HIST1H2BCP62807 126 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 RAB35Q15286 201 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 CNN3Q15417 329 aaKnown RBP10.24□□□□□ -0.77
UBE3D-206ENST00000505226 EXT1Q16394 746 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 HIST2H2BEQ16778 126 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.24□□□□□ -0.77
UBE3D-206ENST00000505226 LHFPL2Q6ZUX7 228 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF429Q86V71 674 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF100Q8IYN0 542 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 HIST1H2BHQ93079 126 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 HIST1H2BNQ99877 126 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 HIST1H2BMQ99879 126 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF700Q9H0M5 742 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 CALHM2Q9HA72 323 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 DMRT1Q9Y5R6 373 aa10.24□□□□□ -0.77
UBE3D-206ENST00000505226 KIAA1549Q9HCM3 1950 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF407Q9C0G0 2248 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 SLC34A2O95436 690 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 CDS2O95674 445 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 NR2C1P13056 603 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 LIFP15018 202 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 RAB2AP61019 212 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 UBE2KP61086 200 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 HERV-K104P61576 105 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 PSG4Q00888 419 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 PCOLCEQ15113 449 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 TMEM56Q96MV1 263 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 ALKBH3Q96Q83 286 aaPredicted RBP10.23□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF442Q9H7R0 627 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 PLEKHF2Q9H8W4 249 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 PARPBPQ9NWS1 579 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 CRIM1Q9NZV1 1036 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 KIAA1456Q9P272 454 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 TMEM56-RWDD3S4R434 201 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 IGHV5-10-1A0A0J9YXX1 117 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 hCG_38984A0A1B0GV85 526 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 OR6C6A6NF89 314 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 OR7C1O76099 320 aaPredicted RBP10.23□□□□□ -0.77
UBE3D-206ENST00000505226 LY86O95711 162 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 SOD3P08294 240 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 SCTP09683 121 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 PAX9P55771 341 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF154Q13106 437 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF266Q14584 549 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 HERPUD1Q15011 391 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF674Q2M3X9 581 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 KRTAP27-1Q3LI81 207 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 TRIM61Q5EBN2 209 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF383Q8NA42 475 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 CLDND2Q8NHS1 167 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 PIGCQ92535 297 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 SMDT1Q9H4I9 107 aa10.23□□□□□ -0.77
UBE3D-206ENST00000505226 FKBP2P26885 142 aaKnown RBP10.22□□□□□ -0.77
UBE3D-206ENST00000505226 CCL7P80098 99 aa10.22□□□□□ -0.77
UBE3D-206ENST00000505226 MALLQ13021 153 aa10.22□□□□□ -0.77
UBE3D-206ENST00000505226 PDZD11Q5EBL8 140 aa10.22□□□□□ -0.77
UBE3D-206ENST00000505226 ZNF600Q6ZNG1 722 aa10.22□□□□□ -0.77
UBE3D-206ENST00000505226 P4HA3Q7Z4N8 544 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms