RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ZNF660Q6AZW8 331 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 CXorf67Q86X51 503 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 OR2Z1Q8NG97 314 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 HDHD3Q9BSH5 251 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 MYOZ1Q9NP98 299 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 PARP11Q9NR21 331 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 CACNG5Q9UF02 275 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 TDRD6O60522 2096 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 E9PQ18 207 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 J3QT63 122 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 GAPTQ8N292 157 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 GPR27Q9NS67 375 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 GAB2Q9UQC2 676 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 ATP23Q9Y6H3 246 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 ZNF705FA8MVS1 300 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 ABCD4O14678 606 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 CA11O75493 328 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 ZNF705DP0CH99 300 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 ZNF705BP0CI00 300 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 ZP1P60852 638 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 SLC25A53Q5H9E4 307 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 ZNF468Q5VIY5 522 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 SLC36A1Q7Z2H8 476 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 ZNF429Q86V71 674 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 SCCPDHQ8NBX0 429 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 OR4A4PQ8NGN8 299 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 MARVELD3Q96A59 401 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 SMIM7Q9BQ49 75 aa9.39□□□□□ -0.91
LIMCH1-205ENST00000503057 TRGV10A0A0A0MS01 117 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 MFSD2BA6NFX1 497 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 PPP5D1E7EU14 171 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 F6UZH7 168 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 SP1P08047 785 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 HLA-DRB3P79483 266 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 SSUH2Q9Y2M2 353 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 A0A1W2PP11 408 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 POLR2GP62487 172 aaKnown RBP eCLIP9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 DMWDQ09019 674 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 COL4A6Q14031 1691 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 SLC35E1Q96K37 410 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 ATP5SQ99766 215 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 HSF4Q9ULV5 492 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 R4GN57 208 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM90A10PA6NDY2 464 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM90A18PA6NE21 464 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM90A16PA6NEW6 464 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM90A20PA6NIJ5 464 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM90A8PA6NJQ4 464 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM90A7PA6NKC0 464 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM90A22PA8MWA6 464 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM90A12PA8MX19 464 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM90A5PA8MXJ8 464 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM90A23PA8MXZ1 464 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 KRASP01116 189 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM90A15PP0C7V4 464 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM90A13PP0C7W8 464 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM90A14PP0C7W9 464 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FAM90A24PP0C7X0 464 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 NOVA1P51513 510 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 SLC38A11Q08AI6 406 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 C3AR1Q16581 482 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 NHLRC3Q5JS37 347 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 RIPPLY2Q5TAB7 128 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 FBXW9Q5XUX1 488 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 LYZL2Q7Z4W2 148 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 POC1BQ8TC44 478 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 HPSE2Q8WWQ2 592 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 OR2D2Q9H210 308 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 IGLV3-12A0A075B6K2 115 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 ZNF705GA8MUZ8 300 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 RRP8O43159 456 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 CBR1P16152 277 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 CEACAM21Q3KPI0 293 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 DYRK2Q92630 601 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 GMPPAQ96IJ6 420 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 SAMD10Q9BYL1 202 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 AMDHD2Q9Y303 409 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 CHCHD2Q9Y6H1 151 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 LOC390937A0A1W2PQ73 354 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 TMEM210A6NLX4 147 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 METTL15P1P0C7V9 234 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 S100A7P31151 101 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 KIR2DS2P43631 304 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 DYNLT3P51808 116 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 TMEM41BQ5BJD5 291 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 NCR3LG1Q68D85 454 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 OR2W1Q9Y3N9 320 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 SCN8AQ9UQD0 1980 aa9.38□□□□□ -0.91
LIMCH1-205ENST00000503057 MKRN2OSH3BPM6 223 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 CFDP00746 253 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 SLC25A6P12236 298 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 IGFBP3P17936 291 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 OR2B8PP59922 312 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 KCNMB1Q16558 191 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 DAZAP1Q96EP5 407 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 OR51I2Q9H344 312 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 OOEPA6NGQ2 149 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 CD8AP01732 235 aa9.37□□□□□ -0.91
LIMCH1-205ENST00000503057 SEC11BP0C7V7 166 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms