RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 LYG2Q86SG7 212 aa7.16□□□□□ -1.26
USP54-215ENST00000497106 MOGAT3Q86VF5 341 aa7.16□□□□□ -1.26
USP54-215ENST00000497106 LGI3Q8N145 548 aa7.16□□□□□ -1.26
USP54-215ENST00000497106 IL1F10Q8WWZ1 152 aa7.16□□□□□ -1.26
USP54-215ENST00000497106 CACFD1Q9UGQ2 172 aa7.16□□□□□ -1.26
USP54-215ENST00000497106 WIPI2Q9Y4P8 454 aa7.16□□□□□ -1.26
USP54-215ENST00000497106 L7N2F9 121 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 NDUFB3O43676 98 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 SERPINE2P07093 398 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 ACAA1P09110 424 aaPredicted RBP7.15□□□□□ -1.26
USP54-215ENST00000497106 VAMP2P63027 116 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 HLA-DRB3P79483 266 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 IFITM3Q01628 133 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 PIGYQ3MUY2 71 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 TMEM128Q5BJH2 165 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 MUC20Q8N307 709 aaPredicted RBP7.15□□□□□ -1.26
USP54-215ENST00000497106 FAM222BQ8WU58 562 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 GCDHQ92947 438 aaPredicted RBP7.15□□□□□ -1.26
USP54-215ENST00000497106 OR2V2Q96R30 315 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 TINAGL1Q9GZM7 467 aaPredicted RBP7.15□□□□□ -1.26
USP54-215ENST00000497106 MBD2Q9UBB5 411 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 GNG12Q9UBI6 72 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 SHOXO15266 292 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 AGAP20933 346 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 LY6DQ14210 128 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 RSPO1Q2MKA7 263 aaPredicted RBP7.15□□□□□ -1.26
USP54-215ENST00000497106 Q8NA96 180 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 MEGF10Q96KG7 1140 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 DMRTB1Q96MA1 342 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 SUCNR1Q9BXA5 334 aa7.15□□□□□ -1.26
USP54-215ENST00000497106 C13orf42A0A1B0GVH6 325 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 CTSDP07339 412 aaPredicted RBP7.15□□□□□ -1.27
USP54-215ENST00000497106 FCGR3AP08637 254 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 ZNF250P15622 560 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 FCGR2CP31995 323 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 MPV17P39210 176 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 SSTP61278 116 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 HGFACQ04756 655 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 BSPH1Q075Z2 132 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 GNMTQ14749 295 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 RAB1CQ92928 201 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 RRNAD1Q96FB5 475 aaKnown RBP7.15□□□□□ -1.27
USP54-215ENST00000497106 SNX22Q96L94 193 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 MSL2Q9HCI7 577 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 hADV38S2A0JD32 116 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 ZNHIT1O43257 154 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 NOS1APO75052 506 aaPredicted RBP7.15□□□□□ -1.27
USP54-215ENST00000497106 OR4E1P0C645 316 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 PGA5P0DJD9 388 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 GZMHP20718 246 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 MPZP25189 248 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 NPY4RP50391 375 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 PRSS12P56730 875 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 EDDM3BP56851 147 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 MPPED2Q15777 294 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 ALKBH6Q3KRA9 238 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 KRBOX4Q5JUW0 171 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 FAM216AQ8WUB2 273 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 DMRTA2Q96SC8 542 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 DLL4Q9NR61 685 aa7.15□□□□□ -1.27
USP54-215ENST00000497106 KANTRA0A1W2PQU2 76 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 GPR31O00270 319 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 MGST3O14880 152 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 SYNGR1O43759 233 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 SPNP16150 400 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 QRFPP83859 136 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 DMRTC1Q5HYR2 192 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 PRAMEF6Q5VXH4 476 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 SPICQ8N5J4 248 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 FBXW5Q969U6 566 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 GAL3ST2Q9H3Q3 398 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 SLA2Q9H6Q3 261 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 PLEKHF2Q9H8W4 249 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 LIN7CQ9NUP9 197 aaKnown RBP7.14□□□□□ -1.27
USP54-215ENST00000497106 CISD1Q9NZ45 108 aaKnown RBP7.14□□□□□ -1.27
USP54-215ENST00000497106 COL27A1Q8IZC6 1860 aaPredicted RBP7.14□□□□□ -1.27
USP54-215ENST00000497106 RBMXL2O75526 392 aaKnown RBP7.14□□□□□ -1.27
USP54-215ENST00000497106 MUC1P15941 1255 aaPredicted RBP7.14□□□□□ -1.27
USP54-215ENST00000497106 ZBTB25P24278 435 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 RAB7AP51149 207 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 MSMO1Q15800 293 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 MOGAT2Q3SYC2 334 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 Q3ZCU0 254 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 NOXA1Q86UR1 476 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 ZBTB34Q8NCN2 500 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 OR4S1Q8NGB4 309 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 SECTM1Q8WVN6 248 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 ST8SIA4Q92187 359 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 LAMP3Q9UQV4 416 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 A0A0A6YYJ9 748 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 LANCL1O43813 399 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 ERVK-16P61578 105 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 ZNF154Q13106 437 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 ADAM5Q6NVV9 412 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 PRR18Q8N4B5 295 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 CHAC2Q8WUX2 184 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 ITLN1Q8WWA0 313 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 HPSE2Q8WWQ2 592 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 GON7Q9BXV9 100 aa7.14□□□□□ -1.27
USP54-215ENST00000497106 ZNF436Q9C0F3 470 aaPredicted RBP7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms