RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 FAM216AQ8WUB2 273 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 HEXA-AS1Q9H8Q6 139 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 IL36GQ9NZH8 169 aa13.46□□□□□ -0.25
SF3A1-209ENST00000496189 MRPS28Q9Y2Q9 187 aaKnown RBP13.46□□□□□ -0.25
SF3A1-209ENST00000496189 MAGEA13PA6NCF6 341 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 DNAJC9-AS1A6NH13 148 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 MGST3O14880 152 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 ZNF737O75373 536 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 HTR3BO95264 441 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 PAHP00439 452 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 MYL9P24844 172 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 UBE2E1P51965 193 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 ERVFRD-1P60508 538 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 UBA52P62987 128 aaKnown RBP13.45□□□□□ -0.26
SF3A1-209ENST00000496189 MEF2CQ06413 473 aaPredicted RBP13.45□□□□□ -0.26
SF3A1-209ENST00000496189 DEFB112Q30KQ8 113 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 AWAT2Q6E213 333 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 CD200R1LQ6Q8B3 271 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 MUL1Q969V5 352 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 CHST6Q9GZX3 395 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 UNKLQ9H9P5 680 aaKnown RBP13.45□□□□□ -0.26
SF3A1-209ENST00000496189 IL36RNQ9UBH0 155 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 GHRLQ9UBU3 117 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 STUB1Q9UNE7 303 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 SSR3Q9UNL2 185 aa13.45□□□□□ -0.26
SF3A1-209ENST00000496189 PDCD5O14737 125 aa13.44□□□□□ -0.26
SF3A1-209ENST00000496189 DEGS1O15121 323 aa13.44□□□□□ -0.26
SF3A1-209ENST00000496189 CDRT1O95170 752 aa13.44□□□□□ -0.26
SF3A1-209ENST00000496189 OR2H2O95918 312 aa13.44□□□□□ -0.26
SF3A1-209ENST00000496189 FBP1P09467 338 aa13.44□□□□□ -0.26
SF3A1-209ENST00000496189 SLC22A6Q4U2R8 563 aa13.44□□□□□ -0.26
SF3A1-209ENST00000496189 TMEM200BQ69YZ2 307 aa13.44□□□□□ -0.26
SF3A1-209ENST00000496189 TRAPPC6BQ86SZ2 158 aa13.44□□□□□ -0.26
SF3A1-209ENST00000496189 LRRTM1Q86UE6 522 aa13.44□□□□□ -0.26
SF3A1-209ENST00000496189 Q8N7P7 452 aa13.44□□□□□ -0.26
SF3A1-209ENST00000496189 ZDHHC22Q8N966 263 aa13.44□□□□□ -0.26
SF3A1-209ENST00000496189 Q8NFD4 153 aa13.44□□□□□ -0.26
SF3A1-209ENST00000496189 GCDHQ92947 438 aaPredicted RBP13.44□□□□□ -0.26
SF3A1-209ENST00000496189 MRPS24Q96EL2 167 aaKnown RBP13.44□□□□□ -0.26
SF3A1-209ENST00000496189 PPIL3Q9H2H8 161 aaKnown RBP13.44□□□□□ -0.26
SF3A1-209ENST00000496189 TRAV1-2A0A0B4J238 106 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 BTBD17A6NE02 478 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 NPFFO15130 113 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 UBBP0CG47 229 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 GTF2F2P13984 249 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 GP2P55259 537 aaKnown RBP13.43□□□□□ -0.26
SF3A1-209ENST00000496189 LGALS4P56470 323 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 IL13RA2Q14627 380 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 TIMM50Q3ZCQ8 353 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 GLIPR1L1Q6UWM5 242 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 C17orf107Q6ZR85 190 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 OSR2Q8N2R0 312 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.43□□□□□ -0.26
SF3A1-209ENST00000496189 OR51T1Q8NGJ9 327 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 OR10K1Q8NGX5 313 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 SSMEM1Q8WWF3 244 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 ZNF714Q96N38 554 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 DPAGT1Q9H3H5 408 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 LINC00312Q9Y6C7 94 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 FBN1P35555 2871 aaKnown RBP13.43□□□□□ -0.26
SF3A1-209ENST00000496189 COL6A5A8TX70 2615 aa13.43□□□□□ -0.26
SF3A1-209ENST00000496189 TRGV10A0A0A0MS01 117 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 TMEM82A0PJX8 343 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 MEIOCA2RUB1 952 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 RNASEK-C17orf49H0YIS7 233 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 CLDN34H7C241 214 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 RBP4P02753 201 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 ZNF728P0DKX0 622 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 CD36P16671 472 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 SERPINA2P20848 420 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 ERP29P30040 261 aaKnown RBP13.42□□□□□ -0.26
SF3A1-209ENST00000496189 FGF9P31371 208 aaPredicted RBP13.42□□□□□ -0.26
SF3A1-209ENST00000496189 ZNF273Q14593 569 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 C12orf54Q6X4T0 127 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 LINC00596Q86U02 117 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 TMEM86BQ8N661 226 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 OR6M1Q8NGM8 313 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 OR13D1Q8NGV5 346 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 ZNF48Q96MX3 618 aaPredicted RBP13.42□□□□□ -0.26
SF3A1-209ENST00000496189 DUX5Q96PT3 197 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 NKX3-1Q99801 234 aaPredicted RBP13.42□□□□□ -0.26
SF3A1-209ENST00000496189 CST11Q9H112 138 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 GAL3ST2Q9H3Q3 398 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 PLGRKTQ9HBL7 147 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 ESM1Q9NQ30 184 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 ST3GAL6Q9Y274 331 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 POMT1Q9Y6A1 747 aa13.42□□□□□ -0.26
SF3A1-209ENST00000496189 A0A0U1RQK1 487 aa13.41□□□□□ -0.26
SF3A1-209ENST00000496189 MDFIC2A0A1B0GVS7 189 aa13.41□□□□□ -0.26
SF3A1-209ENST00000496189 A0A1W2PRD5 423 aa13.41□□□□□ -0.26
SF3A1-209ENST00000496189 A0A1W2PRF3 423 aa13.41□□□□□ -0.26
SF3A1-209ENST00000496189 A0A1W2PRM7 423 aa13.41□□□□□ -0.26
SF3A1-209ENST00000496189 TRIM64CA6NLI5 447 aa13.41□□□□□ -0.26
SF3A1-209ENST00000496189 H3BUI4 141 aa13.41□□□□□ -0.26
SF3A1-209ENST00000496189 HOXA3O43365 443 aaPredicted RBP13.41□□□□□ -0.26
SF3A1-209ENST00000496189 PSPNO60542 156 aa13.41□□□□□ -0.26
SF3A1-209ENST00000496189 CRYBA1P05813 215 aa13.41□□□□□ -0.26
SF3A1-209ENST00000496189 RNASE1P07998 156 aaKnown RBP13.41□□□□□ -0.26
SF3A1-209ENST00000496189 CCL3L1P16619 93 aa13.41□□□□□ -0.26
SF3A1-209ENST00000496189 JUNBP17275 347 aaPredicted RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms