RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 CST2P09228 141 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 CCL20P78556 96 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 IGFBP7Q16270 282 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 FBXL14Q8N1E6 418 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 KCNE4Q8WWG9 221 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 CALHM2Q9HA72 323 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 SMCO4Q9NRQ5 59 aa14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 COL27A1Q8IZC6 1860 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-210ENST00000494566 TTC28Q96AY4 2481 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 LNP1A1A4G5 178 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 OR6C6A6NF89 314 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 FAM24AA6NFZ4 105 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 SERPINE3A8MV23 424 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 B4E171 279 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 PET100P0DJ07 73 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 EDN3P14138 238 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 ACP1P24666 158 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 TSPAN7P41732 249 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 SULT1A2P50226 295 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 B2MP61769 119 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 SSPNQ14714 243 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 HAGHQ16775 308 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 SPIN3Q5JUX0 258 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 C10orf91Q5T1B1 145 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 CPT1CQ8TCG5 803 aa14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 KLF2Q9Y5W3 355 aaPredicted RBP14.27□□□□□ -0.12
CCDC88B-210ENST00000494566 DEDDO75618 318 aa14.27□□□□□ -0.13
CCDC88B-210ENST00000494566 CST7O76096 145 aa14.27□□□□□ -0.13
CCDC88B-210ENST00000494566 CST4P01036 141 aa14.27□□□□□ -0.13
CCDC88B-210ENST00000494566 RBP2P50120 134 aa14.27□□□□□ -0.13
CCDC88B-210ENST00000494566 FAM3AP98173 230 aa14.27□□□□□ -0.13
CCDC88B-210ENST00000494566 PLCXD3Q63HM9 321 aa14.27□□□□□ -0.13
CCDC88B-210ENST00000494566 ABLIM2Q6H8Q1 611 aa14.27□□□□□ -0.13
CCDC88B-210ENST00000494566 CALHM1Q8IU99 346 aa14.27□□□□□ -0.13
CCDC88B-210ENST00000494566 LILRB1Q8NHL6 650 aaPredicted RBP14.27□□□□□ -0.13
CCDC88B-210ENST00000494566 FAM86C1Q9NVL1 165 aa14.27□□□□□ -0.13
CCDC88B-210ENST00000494566 H3BP45 60 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 APOC1P02654 83 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 SERPINA7P05543 415 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 PTAFRP25105 342 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 GFRA1P56159 465 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 SLC7A10Q9NS82 523 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 PRR14LQ5THK1 2151 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 IGHV3-64DA0A0J9YX35 117 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 YIF1AO95070 293 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 HLA-HP01893 362 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 ZNF728P0DKX0 622 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 MAGEA5P43359 124 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 NPBWR2P48146 333 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 IZUMO4Q1ZYL8 232 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 TMEM268Q5VZI3 342 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 ZNF343Q6P1L6 599 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 FBXW12Q6X9E4 464 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 OR10AD1Q8NGE0 317 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 UBALD1Q8TB05 177 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 SCGB3A2Q96PL1 93 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 ANXA10Q9UJ72 324 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 NOSIPQ9Y314 301 aaKnown RBP14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 TIMM10BQ9Y5J6 103 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 EP300Q09472 2414 aaPredicted RBP14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 DOCK11Q5JSL3 2073 aa14.26□□□□□ -0.13
CCDC88B-210ENST00000494566 ZNF503-AS2A6NEH8 195 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 CEACAM18A8MTB9 384 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 NEURL1O76050 574 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 CD5P06127 495 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 FABP1P07148 127 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 DVL1P1P54792 670 aaPredicted RBP14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 TUSC5Q8IXB3 177 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 ZDHHC8Q9ULC8 765 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 OR7C1O76099 320 aaPredicted RBP14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 CTAG1AP78358 180 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 RUNX1Q01196 453 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 IL15RAQ13261 267 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 NSUN5P2Q63ZY6 315 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 EIF5AL1Q6IS14 154 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 OR51B6Q9H340 312 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 ST3GAL6Q9Y274 331 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 SVILO95425 2214 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 MRPL33O75394 65 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 S100A9P06702 114 aaKnown RBP14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 POLR2GP62487 172 aaKnown RBP eCLIP14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 FAM189A2Q15884 450 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 CDPF1Q6NVV7 123 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 VASH2Q86V25 355 aa14.25□□□□□ -0.13
CCDC88B-210ENST00000494566 hCG_38984A0A1B0GV85 526 aa14.24□□□□□ -0.13
CCDC88B-210ENST00000494566 IGHEP01854 428 aa14.24□□□□□ -0.13
CCDC88B-210ENST00000494566 ARF1P84077 181 aaKnown RBP14.24□□□□□ -0.13
CCDC88B-210ENST00000494566 CNN3Q15417 329 aaKnown RBP14.24□□□□□ -0.13
CCDC88B-210ENST00000494566 FAM209BQ5JX69 171 aa14.24□□□□□ -0.13
CCDC88B-210ENST00000494566 Q6ZPA2 131 aa14.24□□□□□ -0.13
CCDC88B-210ENST00000494566 ZNF565Q8N9K5 539 aa14.24□□□□□ -0.13
CCDC88B-210ENST00000494566 OR2M7Q8NG81 312 aa14.24□□□□□ -0.13
CCDC88B-210ENST00000494566 SPSB1Q96BD6 273 aa14.24□□□□□ -0.13
CCDC88B-210ENST00000494566 HS3ST6Q96QI5 342 aa14.24□□□□□ -0.13
CCDC88B-210ENST00000494566 ZNF442Q9H7R0 627 aa14.24□□□□□ -0.13
CCDC88B-210ENST00000494566 Q6ZSR3 168 aa14.24□□□□□ -0.13
CCDC88B-210ENST00000494566 IL17BQ9UHF5 180 aa14.24□□□□□ -0.13
CCDC88B-210ENST00000494566 FAM157AC9JC47 383 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 CYTIPO60759 359 aa14.23□□□□□ -0.13
CCDC88B-210ENST00000494566 JTBO76095 146 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms