RNA–Protein interactions for RNA: ENST00000494334.1

COL1A1-208, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 2

Gene COL1A1, Length 396 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-208ENST00000494334 TMEM104Q8NE00 496 aa11.12□□□□□ -0.63
COL1A1-208ENST00000494334 TNFRSF14Q92956 283 aa11.12□□□□□ -0.63
COL1A1-208ENST00000494334 PPA2Q9H2U2 334 aa11.12□□□□□ -0.63
COL1A1-208ENST00000494334 BANF2Q9H503 90 aa11.12□□□□□ -0.63
COL1A1-208ENST00000494334 SIRT7Q9NRC8 400 aa11.12□□□□□ -0.63
COL1A1-208ENST00000494334 STUB1Q9UNE7 303 aa11.12□□□□□ -0.63
COL1A1-208ENST00000494334 NIPBLQ6KC79 2804 aaeCLIP11.11□□□□□ -0.63
COL1A1-208ENST00000494334 TRAV1-2A0A0B4J238 106 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 A0A1W2PPH5 198 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 MEX3AA1L020 520 aaKnown RBP11.11□□□□□ -0.63
COL1A1-208ENST00000494334 TRIM64CA6NLI5 447 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 SLC22A1O15245 554 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 CRTAPO75718 401 aaPredicted RBP11.11□□□□□ -0.63
COL1A1-208ENST00000494334 OR7C1O76099 320 aaPredicted RBP11.11□□□□□ -0.63
COL1A1-208ENST00000494334 CSN2P05814 226 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 VSIG8P0DPA2 414 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 PRTN3P24158 256 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 FPR2P25090 351 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 FGF9P31371 208 aaPredicted RBP11.11□□□□□ -0.63
COL1A1-208ENST00000494334 P2RX3P56373 397 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 ERVFRD-1P60508 538 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 PRB3Q04118 309 aaPredicted RBP11.11□□□□□ -0.63
COL1A1-208ENST00000494334 MEF2CQ06413 473 aaPredicted RBP11.11□□□□□ -0.63
COL1A1-208ENST00000494334 AESQ08117 197 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 SCGB2A2Q13296 93 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 BLMHQ13867 455 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 TAF9Q16594 264 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 GPR157Q5UAW9 335 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 C22orf42Q6IC83 251 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 TCF23Q7RTU1 214 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 LINC00596Q86U02 117 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 BPIFB2Q8N4F0 458 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 OR6M1Q8NGM8 313 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 LHX4Q969G2 390 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 SLC25A28Q96A46 364 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 MRPS24Q96EL2 167 aaKnown RBP11.11□□□□□ -0.63
COL1A1-208ENST00000494334 MS4A7Q9GZW8 240 aaPredicted RBP11.11□□□□□ -0.63
COL1A1-208ENST00000494334 OR51E2Q9H255 320 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 OCEL1Q9H607 264 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 IFT22Q9H7X7 185 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 METTL8Q9H825 291 aaKnown RBP11.11□□□□□ -0.63
COL1A1-208ENST00000494334 UNKLQ9H9P5 680 aaKnown RBP11.11□□□□□ -0.63
COL1A1-208ENST00000494334 TXNL4BQ9NX01 149 aaKnown RBP11.11□□□□□ -0.63
COL1A1-208ENST00000494334 SOX21Q9Y651 276 aaPredicted RBP11.11□□□□□ -0.63
COL1A1-208ENST00000494334 V9GY05 133 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 NF1P21359 2839 aa11.11□□□□□ -0.63
COL1A1-208ENST00000494334 hADV38S2A0JD32 116 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 SLC17A2O00624 439 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 HSPB6O14558 160 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 UBBP0CG47 229 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 MGMTP16455 207 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 CD36P16671 472 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 GLIPR1P48060 266 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 DLX6P56179 175 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 BPIFB3P59826 476 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 ATXN7L3Q14CW9 347 aaPredicted RBP11.1□□□□□ -0.63
COL1A1-208ENST00000494334 MPV17LQ2QL34 196 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 TUSC1Q2TAM9 212 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 PAN3Q58A45 887 aaKnown RBP11.1□□□□□ -0.63
COL1A1-208ENST00000494334 OR10K2Q6IF99 312 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 BRD3OSQ6XYD6 125 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 C9orf139Q6ZV77 190 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 PDZD9Q8IXQ8 264 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 SUMF2Q8NBJ7 301 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 FAM46BQ96A09 425 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 COQ2Q96H96 371 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 SLC6A7Q99884 636 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 SELENOIQ9C0D9 397 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 PLGRKTQ9HBL7 147 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 ING3Q9NXR8 418 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 SSR3Q9UNL2 185 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 JMJD1CQ15652 2540 aa11.1□□□□□ -0.63
COL1A1-208ENST00000494334 IGHV1-69DA0A0B4J2H0 117 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 FUOMA2VDF0 154 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 C17orf98A8MV24 154 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 RNASEK-C17orf49H0YIS7 233 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 PDCD5O14737 125 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 MPIG6BO95866 241 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 IGHV1-69P01742 117 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 ZNF728P0DKX0 622 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 JUNBP17275 347 aaPredicted RBP11.09□□□□□ -0.63
COL1A1-208ENST00000494334 GADD45AP24522 165 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 MYL9P24844 172 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 PSMD7P51665 324 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 QRFPP83859 136 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 KRBOX4Q5JUW0 171 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 ATAD3CQ5T2N8 411 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 RUSC1-AS1Q66K80 236 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 BRICD5Q6PL45 260 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 PLPPR1Q8TBJ4 325 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 Q96M66 194 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 ZNF48Q96MX3 618 aaPredicted RBP11.09□□□□□ -0.63
COL1A1-208ENST00000494334 DPCDQ9BVM2 203 aaPredicted RBP11.09□□□□□ -0.63
COL1A1-208ENST00000494334 CST11Q9H112 138 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 KCNK15Q9H427 330 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 VCX3AQ9NNX9 186 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 LINC00312Q9Y6C7 94 aa11.09□□□□□ -0.63
COL1A1-208ENST00000494334 ODAMA1E959 279 aa11.08□□□□□ -0.64
COL1A1-208ENST00000494334 FAM90A10PA6NDY2 464 aa11.08□□□□□ -0.64
COL1A1-208ENST00000494334 FAM90A18PA6NE21 464 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms