RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 M1APQ8TC57 530 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZNF837Q96EG3 531 aaPredicted RBP9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SPIN2AQ99865 258 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SPIN2BQ9BPZ2 258 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 DNAJB11Q9UBS4 358 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ST6GALNAC2Q9UJ37 374 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PITPNC1Q9UKF7 332 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ACACBO00763 2458 aa9.44□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ST8SIA3O43173 380 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 HPNP05981 417 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR8U8P0C7N1 319 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 IL10RAQ13651 578 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PLPPR5Q32ZL2 321 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 DRAM2Q6UX65 266 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SLC36A1Q7Z2H8 476 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZNF695Q8IW36 515 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 C17orf78Q8N4C9 275 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PGLYRP3Q96LB9 341 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 DUSP13Q9UII6 198 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 FZR1Q9UM11 496 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR6C6A6NF89 314 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR4C45A6NMZ5 311 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 E5RGE8 158 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 H3BQ15 152 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MSTNO14793 375 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 KLK10O43240 276 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SIAH2O43255 324 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 RAD51DO75771 328 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 NXPH3O95157 252 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 DLK1P80370 383 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 IGLV3-21P80748 117 aaPredicted RBP9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TESK1Q15569 626 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 LINC01590Q5TEZ4 76 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 BAGE3Q86Y29 109 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 BAGE2Q86Y30 109 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 GJC3Q8NFK1 279 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 WDR13Q9H1Z4 485 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZNF71Q9NQZ8 489 aaPredicted RBP9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 NSG2Q9Y328 171 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CCDC187A0A096LP49 1063 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MS4A18H0YCH9 400 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SELLP14151 372 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MS4A18Q3C1V0 323 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ALKBH6Q3KRA9 238 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 THEM4Q5T1C6 240 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 NOXO1Q8NFA2 376 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR10A2Q9H208 303 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 R4GMQ9 66 aa9.43□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TRAV14DV4A0A0A6YYC5 116 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 LYPD3O95274 346 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CD74P04233 296 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 EMC4Q5J8M3 183 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MRGPREQ86SM8 312 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SLC25A42Q86VD7 318 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 WDR5BQ86VZ2 330 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CXorf67Q86X51 503 aaPredicted RBP9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CCDC54Q8NEL0 328 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 RBMXL1Q96E39 390 aaKnown RBP9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SEH1LQ96EE3 360 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PLPPR2Q96GM1 343 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SGCZQ96LD1 299 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MS4A10Q96PG2 267 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 RAB18Q9NP72 206 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PPP1R14DQ9NXH3 145 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZGRF1Q86YA3 2104 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 HEATR1Q9H583 2144 aaKnown RBP9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PLCE1Q9P212 2302 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TMEM272A0A1B0GTI8 110 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SERPINA7P05543 415 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZNF32P17041 273 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 KIR3DL2P43630 455 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ASCL1P50553 236 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 FOXC1Q12948 553 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SRSF6Q13247 344 aaKnown RBP9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 KHDC3LQ587J8 217 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 LCN15Q6UWW0 184 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PRSS35Q8N3Z0 413 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZNF709Q8N972 641 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SLC25A43Q8WUT9 341 aaPredicted RBP9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TRIB1Q96RU8 372 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ZNF106Q9H2Y7 1883 aaKnown RBP9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 UPK3AO75631 287 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SULT1A2P50226 295 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 DSCR4P56555 118 aaPredicted RBP9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 PCOLCEQ15113 449 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CPT1CQ8TCG5 803 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ADAM19Q9H013 955 aa9.42□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 RNF222A6NCQ9 220 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CDRT15L2A8MXV6 281 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 FTCDNL1E5RQL4 147 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 EFSO43281 561 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 UMODP07911 640 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 MLF1P58340 268 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ARL6IP1Q15041 203 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 CDC20BQ86Y33 519 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 TUSC5Q8IXB3 177 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 SLC22A24Q8N4F4 322 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR10AD1Q8NGE0 317 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 OR51F2Q8NH61 342 aa9.41□□□□□ -0.9
MSH5-SAPCD1-207ENST00000493662 ASB10Q8WXI3 467 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms