RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 ENOPH1Q9UHY7 261 aa9.86□□□□□ -0.83
CPSF3-204ENST00000489403 A0A087X0M5 115 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 A0A1B0GX30 115 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 ODAMA1E959 279 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 ISG15P05161 165 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 ZNF44P15621 663 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 FASP25445 335 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 HOXD3P31249 432 aaPredicted RBP9.85□□□□□ -0.83
CPSF3-204ENST00000489403 CEACAM3P40198 252 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 OR3A4PP47883 348 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 NANOS3P60323 173 aaKnown RBP9.85□□□□□ -0.83
CPSF3-204ENST00000489403 EGFEM1PQ0D2K5 195 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 TMED1Q13445 227 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 KPNB1Q14974 876 aaKnown RBP9.85□□□□□ -0.83
CPSF3-204ENST00000489403 ATXN7L3Q14CW9 347 aaPredicted RBP9.85□□□□□ -0.83
CPSF3-204ENST00000489403 C17orf58Q2M2W7 97 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 C9orf152Q5JTZ5 239 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 KRBOX4Q5JUW0 171 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 Q6P435 159 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 ETV3LQ6ZN32 361 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 OSR2Q8N2R0 312 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 LINC00482Q8N8I6 264 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 OR4D6Q8NGJ1 314 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 CREB3L1Q96BA8 519 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 RIBC2Q9H4K1 309 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 ING3Q9NXR8 418 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 RYR3Q15413 4870 aa9.85□□□□□ -0.83
CPSF3-204ENST00000489403 ZNF729A6NN14 1252 aaPredicted RBP9.84□□□□□ -0.83
CPSF3-204ENST00000489403 SLC33A1O00400 549 aaPredicted RBP9.84□□□□□ -0.83
CPSF3-204ENST00000489403 TOR1AO14656 332 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 CLIC3O95833 236 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 MT-ND2P03891 347 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 OCM2P0CE71 109 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 OCMP0CE72 109 aaPredicted RBP9.84□□□□□ -0.83
CPSF3-204ENST00000489403 MNDAP41218 407 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 SCN1BQ07699 218 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 RBM39Q14498 530 aaKnown RBP9.84□□□□□ -0.83
CPSF3-204ENST00000489403 DEFB121Q5J5C9 76 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 CCDC144NLQ6NUI1 221 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 FDX2Q6P4F2 183 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 OR13C9Q8NGT0 318 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 RFKQ969G6 155 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 KIRREL1Q96J84 757 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 PPIL3Q9H2H8 161 aaKnown RBP9.84□□□□□ -0.83
CPSF3-204ENST00000489403 MOB4Q9Y3A3 225 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 AP4S1Q9Y587 144 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 PCDHGB5Q9Y5G0 923 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 HSPE1-MOB4S4R3N1 261 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 COL7A1Q02388 2944 aa9.84□□□□□ -0.83
CPSF3-204ENST00000489403 PSMB11A5LHX3 300 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 FAM90A18PA6NE21 464 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 FAM90A16PA6NEW6 464 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 FAM90A20PA6NIJ5 464 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 FAM90A9PA6NNJ1 464 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 FAM90A12PA8MX19 464 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 FAM90A5PA8MXJ8 464 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 OOSP1A8MZH6 123 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 J3QRE1 110 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 M0QZK8 103 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 SNRNP70P08621 437 aaKnown RBP9.83□□□□□ -0.84
CPSF3-204ENST00000489403 HTR1AP08908 422 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 FAM90A15PP0C7V4 464 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 FAM90A13PP0C7W8 464 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 FAM90A14PP0C7W9 464 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 FAM90A24PP0C7X0 464 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 PRRX1P54821 245 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 CDK5R1Q15078 307 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 MRPL41Q8IXM3 137 aaKnown RBP9.83□□□□□ -0.84
CPSF3-204ENST00000489403 SAXO1Q8IYX7 474 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 CHST4Q8NCG5 386 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 OR13C3Q8NGS6 347 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 TOMM40LQ969M1 308 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 RHOFQ9HBH0 211 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 NEK6Q9HC98 313 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.83□□□□□ -0.84
CPSF3-204ENST00000489403 OAZ3Q9UMX2 235 aa9.83□□□□□ -0.84
CPSF3-204ENST00000489403 KBTBD11-OT1A0A1B0GTJ5 212 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 DAPL1A0PJW8 107 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 HSPB6O14558 160 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 SLC16A6O15403 523 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 FAM106CPP0CH98 169 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 CGB3P0DN86 165 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 CGB7P0DN87 165 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 FCGR1AP12314 374 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 NFYBP25208 207 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 GLP1RP43220 463 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 THBS3P49746 956 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 CCR9P51686 369 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 ZP1P60852 638 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 C18orf65Q6ZTR6 163 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 KCTD20Q7Z5Y7 419 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 ZNF329Q86UD4 541 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 THNSL2Q86YJ6 484 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 OR51D1Q8NGF3 324 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 OR56B4Q8NH76 319 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 OR9G1Q8NH87 305 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 RPEQ96AT9 228 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 RNFT2Q96EX2 444 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 PELI1Q96FA3 418 aa9.82□□□□□ -0.84
CPSF3-204ENST00000489403 ZNF649Q9BS31 505 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms