RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 CCKARP32238 428 aa15.51■□□□□ 0.07
NPHP4-209ENST00000489180 NXPH1P58417 271 aa15.51■□□□□ 0.07
NPHP4-209ENST00000489180 TRAV17A0A0B4J275 112 aa15.51■□□□□ 0.07
NPHP4-209ENST00000489180 CYR61O00622 381 aa15.51■□□□□ 0.07
NPHP4-209ENST00000489180 CSN3P07498 182 aa15.51■□□□□ 0.07
NPHP4-209ENST00000489180 HLA-GP17693 338 aa15.51■□□□□ 0.07
NPHP4-209ENST00000489180 SKP2Q13309 424 aa15.51■□□□□ 0.07
NPHP4-209ENST00000489180 RASL10BQ96S79 203 aa15.51■□□□□ 0.07
NPHP4-209ENST00000489180 DTX4Q9Y2E6 619 aa15.51■□□□□ 0.07
NPHP4-209ENST00000489180 F12P00748 615 aaPredicted RBP15.51■□□□□ 0.07
NPHP4-209ENST00000489180 IER2Q9BTL4 223 aa15.51■□□□□ 0.07
NPHP4-209ENST00000489180 Q9N2K0 584 aa15.51■□□□□ 0.07
NPHP4-209ENST00000489180 SMCHD1A6NHR9 2005 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 C7orf77A4D0Y5 90 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 RPL13AP40429 203 aaKnown RBP15.5■□□□□ 0.07
NPHP4-209ENST00000489180 SSPNQ14714 243 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 TUSC5Q8IXB3 177 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 R3HDM4Q96D70 268 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 SH2D2AQ9NP31 389 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 VSIG4Q9Y279 399 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 C11orf94C9JXX5 98 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 SEC11CQ9BY50 192 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 KLHDC2Q9Y2U9 406 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 NKX2-6A6NCS4 301 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 MT-CO3P00414 261 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 SLC25A30Q5SVS4 291 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 TMEM52Q8NDY8 209 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 OR2T10Q8NGZ9 312 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 SSMEM1Q8WWF3 244 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 SRD5A3Q9H8P0 318 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 A0A1W2PRD5 423 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 A0A1W2PRF3 423 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 A0A1W2PRM7 423 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 VSIG8P0DPA2 414 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 TRA2AQ13595 282 aaKnown RBP eCLIP15.5■□□□□ 0.07
NPHP4-209ENST00000489180 TCTEX1D1Q8N7M0 179 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 PTPMT1Q8WUK0 201 aaPredicted RBP15.5■□□□□ 0.07
NPHP4-209ENST00000489180 GABRG3Q99928 467 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 HDHD3Q9BSH5 251 aaPredicted RBP15.5■□□□□ 0.07
NPHP4-209ENST00000489180 CXXC4Q9H2H0 198 aa15.5■□□□□ 0.07
NPHP4-209ENST00000489180 NUP214P35658 2090 aaPredicted RBP15.5■□□□□ 0.07
NPHP4-209ENST00000489180 SULT1A1P50225 295 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 VWA1Q6PCB0 445 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 UBE2L3P68036 154 aaKnown RBP15.49■□□□□ 0.07
NPHP4-209ENST00000489180 EWSR1Q01844 656 aaKnown RBP eCLIP15.49■□□□□ 0.078e-8■■■■■ 31.8
NPHP4-209ENST00000489180 OR1K1Q8NGR3 316 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 CHAC2Q8WUX2 184 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 PRSS50Q9UI38 385 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 ST6GALNAC2Q9UJ37 374 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 A0A1B0GTQ1 180 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 PPYP01298 95 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 BGLAPP02818 100 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 PMELP40967 661 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 KIR2DS2P43631 304 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 KLF3P57682 345 aaPredicted RBP15.49■□□□□ 0.07
NPHP4-209ENST00000489180 SPCS3P61009 180 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 FOXC1Q12948 553 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 TRAT1Q6PIZ9 186 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 CLEC1BQ9P126 229 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 KLK13Q9UKR3 277 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 R4GN57 208 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 LY86O95711 162 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 RCC1P18754 421 aaPredicted RBP15.49■□□□□ 0.07
NPHP4-209ENST00000489180 ATP6V1FQ16864 119 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 ADAT3Q96EY9 351 aaPredicted RBP15.49■□□□□ 0.07
NPHP4-209ENST00000489180 PACRGQ96M98 296 aaPredicted RBP15.49■□□□□ 0.07
NPHP4-209ENST00000489180 UCN2Q96RP3 112 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 SLC26A1Q9H2B4 701 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 DCAF16Q9NXF7 216 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 PCDHGA9Q9Y5G4 932 aaKnown RBP15.49■□□□□ 0.07
NPHP4-209ENST00000489180 COL18A1P39060 1754 aa15.49■□□□□ 0.07
NPHP4-209ENST00000489180 SURF2Q15527 256 aaPredicted RBP15.48■□□□□ 0.07
NPHP4-209ENST00000489180 ZNF764Q96H86 408 aaPredicted RBP15.48■□□□□ 0.07
NPHP4-209ENST00000489180 SLC2A9Q9NRM0 540 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 A0A1W2PQD3 144 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 OR5B21A6NL26 309 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 F5H697 171 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 M0R2Z0 102 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 CDIPTO14735 213 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 PPIHO43447 177 aaKnown RBP15.48■□□□□ 0.07
NPHP4-209ENST00000489180 AGFG2O95081 481 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 G6PCP35575 357 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 IGSF11Q5DX21 431 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 RHBDD2Q6NTF9 364 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 AURKAIP1Q9NWT8 199 aaPredicted RBP15.48■□□□□ 0.07
NPHP4-209ENST00000489180 LINC00862A6NCI5 91 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 FAM157AC9JC47 383 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 GOSR1O95249 250 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 CRYABP02511 175 aaKnown RBP15.48■□□□□ 0.07
NPHP4-209ENST00000489180 EPHA8P29322 1005 aaPredicted RBP15.48■□□□□ 0.07
NPHP4-209ENST00000489180 PEBP1P30086 187 aaKnown RBP15.48■□□□□ 0.07
NPHP4-209ENST00000489180 NANOS3P60323 173 aaKnown RBP15.48■□□□□ 0.07
NPHP4-209ENST00000489180 TNXAQ16473 311 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 ZDHHC16Q969W1 377 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 LYRM2Q9NU23 88 aaPredicted RBP15.48■□□□□ 0.07
NPHP4-209ENST00000489180 KIAA0100Q14667 2235 aaKnown RBP15.48■□□□□ 0.07
NPHP4-209ENST00000489180 FAM90A27PA6NNH2 459 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 SPINT1O43278 529 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 CRYBA1P05813 215 aa15.48■□□□□ 0.07
NPHP4-209ENST00000489180 RPS4Y1P22090 263 aaKnown RBP15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms