RNA–Protein interactions for RNA: ENST00000487747.5

SMC4-219, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 637 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-219ENST00000487747 ZNF707Q96C28 371 aaPredicted RBP0.58□□□□□ -2.32
SMC4-219ENST00000487747 CMBLQ96DG6 245 aa0.58□□□□□ -2.32
SMC4-219ENST00000487747 OR2M4Q96R27 311 aa0.58□□□□□ -2.32
SMC4-219ENST00000487747 TXNDC17Q9BRA2 123 aa0.58□□□□□ -2.32
SMC4-219ENST00000487747 ZNF436Q9C0F3 470 aaPredicted RBP0.58□□□□□ -2.32
SMC4-219ENST00000487747 IQCGQ9H095 443 aaKnown RBP0.58□□□□□ -2.32
SMC4-219ENST00000487747 SLC38A1Q9H2H9 487 aa0.58□□□□□ -2.32
SMC4-219ENST00000487747 PRORYQ9H606 182 aa0.58□□□□□ -2.32
SMC4-219ENST00000487747 SDHAF3Q9NRP4 125 aa0.58□□□□□ -2.32
SMC4-219ENST00000487747 PSORS1C2Q9UIG4 136 aa0.58□□□□□ -2.32
SMC4-219ENST00000487747 LINC00588Q9Y4M8 146 aa0.58□□□□□ -2.32
SMC4-219ENST00000487747 MDC1Q14676 2089 aaKnown RBP0.58□□□□□ -2.32
SMC4-219ENST00000487747 CEP170Q5SW79 1584 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 CACNA1SQ13698 1873 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 IGHV1-45A0A0A0MS14 117 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 A0A1B0GTI1 187 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 OR5H14A6NHG9 310 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 POP7O75817 140 aaKnown RBP0.57□□□□□ -2.32
SMC4-219ENST00000487747 GPR75O95800 540 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 SOD3P08294 240 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 PSKH1P11801 424 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 MSR1P21757 451 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 GPR4P46093 362 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 IFFO1Q0D2I5 559 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 GPR176Q14439 515 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 SS18Q15532 418 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 MMDQ15546 238 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 ZCWPW2Q504Y3 356 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 DUPD1Q68J44 220 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 UGT2A3Q6UWM9 527 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 OTUD6AQ7L8S5 288 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 NDNFQ8TB73 568 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 AICDAQ9GZX7 198 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 BLZF1Q9H2G9 400 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 WDR55Q9H6Y2 383 aaPredicted RBP0.57□□□□□ -2.32
SMC4-219ENST00000487747 VPREB3Q9UKI3 123 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 C14orf166Q9Y224 244 aaKnown RBP0.57□□□□□ -2.32
SMC4-219ENST00000487747 TRPM3Q9HCF6 1732 aaPredicted RBP0.57□□□□□ -2.32
SMC4-219ENST00000487747 SLIT2O94813 1529 aa0.57□□□□□ -2.32
SMC4-219ENST00000487747 C19orf71A6NCJ1 209 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 SEC14L6B5MCN3 397 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 CASC3O15234 703 aaKnown RBP0.56□□□□□ -2.32
SMC4-219ENST00000487747 GMDSO60547 372 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 ZNF189O75820 626 aaPredicted RBP0.56□□□□□ -2.32
SMC4-219ENST00000487747 ETHE1O95571 254 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 CD8AP01732 235 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 STAG3L3P0CL85 134 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 SCGB1C2P0DMR2 95 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 SRMP19623 302 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 M6PRP20645 277 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 PRTN3P24158 256 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 GABRA4P48169 554 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 ZNF140P52738 457 aaPredicted RBP0.56□□□□□ -2.32
SMC4-219ENST00000487747 TAL2Q16559 108 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 LAIR2Q6ISS4 152 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 TMCO2Q7Z6W1 182 aaPredicted RBP0.56□□□□□ -2.32
SMC4-219ENST00000487747 NAA40Q86UY6 237 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 NIT1Q86X76 327 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 RBM45Q8IUH3 476 aaKnown RBP0.56□□□□□ -2.32
SMC4-219ENST00000487747 FBXO36Q8NEA4 188 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 OR10P1Q8NGE3 313 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 OR5T3Q8NGG3 340 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 OR52K2Q8NGK3 314 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 OR51Q1Q8NH59 317 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 MFSD8Q8NHS3 518 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 SCGB1C1Q8TD33 95 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 C22orf15Q8WYQ4 148 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 TOP1MTQ969P6 601 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 CENPNQ96H22 339 aaPredicted RBP0.56□□□□□ -2.32
SMC4-219ENST00000487747 FMC1Q96HJ9 113 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 DNAJC30Q96LL9 226 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 OLFM3Q96PB7 478 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 MYCBPQ99417 103 aaPredicted RBP0.56□□□□□ -2.32
SMC4-219ENST00000487747 ANP32EQ9BTT0 268 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 CHID1Q9BWS9 393 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 TSSK6Q9BXA6 273 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 MFSD1Q9H3U5 465 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 RGCCQ9H4X1 137 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 LRRC19Q9H756 370 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 RPUSD1Q9UJJ7 312 aaKnown RBP0.56□□□□□ -2.32
SMC4-219ENST00000487747 SLC22A14Q9Y267 594 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 NRCAMQ92823 1304 aa0.56□□□□□ -2.32
SMC4-219ENST00000487747 AQRO60306 1485 aaKnown RBP eCLIP0.55□□□□□ -2.325e-13■■■■■ 125.3
SMC4-219ENST00000487747 COL18A1P39060 1754 aa0.55□□□□□ -2.32
SMC4-219ENST00000487747 ARAP3Q8WWN8 1544 aa0.55□□□□□ -2.32
SMC4-219ENST00000487747 TRAV8-7A0A075B6U6 113 aa0.55□□□□□ -2.32
SMC4-219ENST00000487747 IGHV3OR15-7A0A075B7D8 119 aa0.55□□□□□ -2.32
SMC4-219ENST00000487747 IGKV1D-43A0A0B4J1Z2 117 aa0.55□□□□□ -2.32
SMC4-219ENST00000487747 PGPA6NDG6 321 aa0.55□□□□□ -2.32
SMC4-219ENST00000487747 RBFOX3A6NFN3 312 aa0.55□□□□□ -2.32
SMC4-219ENST00000487747 H0YIV9 168 aa0.55□□□□□ -2.32
SMC4-219ENST00000487747 TCF21O43680 179 aa0.55□□□□□ -2.32
SMC4-219ENST00000487747 CRTAPO75718 401 aaPredicted RBP0.55□□□□□ -2.32
SMC4-219ENST00000487747 SNAI1O95863 264 aaPredicted RBP0.55□□□□□ -2.32
SMC4-219ENST00000487747 LIPCP11150 499 aa0.55□□□□□ -2.32
SMC4-219ENST00000487747 RALBP11234 206 aa0.55□□□□□ -2.32
SMC4-219ENST00000487747 BNIP2Q12982 314 aa0.55□□□□□ -2.32
SMC4-219ENST00000487747 HES1Q14469 280 aa0.55□□□□□ -2.32
SMC4-219ENST00000487747 NDUFAF6Q330K2 333 aa0.55□□□□□ -2.32
SMC4-219ENST00000487747 TMEM176BQ3YBM2 270 aaPredicted RBP0.55□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms