RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 GDNFP39905 211 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 OR3A1P47881 315 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 KLF9Q13886 244 aaPredicted RBP6.89□□□□□ -1.31
USP4-210ENST00000483212 ZMYND11Q15326 602 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 ATAD3CQ5T2N8 411 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 ATPAF1Q5TC12 328 aaPredicted RBP6.89□□□□□ -1.31
USP4-210ENST00000483212 SFRP4Q6FHJ7 346 aaPredicted RBP6.89□□□□□ -1.31
USP4-210ENST00000483212 DUX4L9Q6RFH8 374 aaPredicted RBP6.89□□□□□ -1.31
USP4-210ENST00000483212 FIP1L1Q6UN15 594 aaKnown RBP6.89□□□□□ -1.31
USP4-210ENST00000483212 ZNF788Q6ZQV5 615 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 C17orf107Q6ZR85 190 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 C1orf87Q8N0U7 546 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 BOLLQ8N9W6 283 aaKnown RBP6.89□□□□□ -1.31
USP4-210ENST00000483212 OR4S1Q8NGB4 309 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 OR5T2Q8NGG2 359 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 PLPPR1Q8TBJ4 325 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 FCAMRQ8WWV6 532 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 CCL17Q92583 94 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 RDH5Q92781 318 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 SDSLQ96GA7 329 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 GAFA1Q96PS6 74 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 NEDD4LQ96PU5 975 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 OCSTAMPQ9BR26 566 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 HDHD3Q9BSH5 251 aaPredicted RBP6.89□□□□□ -1.31
USP4-210ENST00000483212 DPCDQ9BVM2 203 aaPredicted RBP6.89□□□□□ -1.31
USP4-210ENST00000483212 SHARPINQ9H0F6 387 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 LIME1Q9H400 295 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 SPACA1Q9HBV2 294 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 ABCB10Q9NRK6 738 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 PLEKHJ1Q9NW61 149 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 DUX4Q9UBX2 424 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 MAB21L2Q9Y586 359 aa6.89□□□□□ -1.31
USP4-210ENST00000483212 DYSFO75923 2080 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 PPIAL4EA0A075B759 164 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 TRBV6-6A0A0A6YYG2 114 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 KRTAP9-6A0A140TA67 174 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 ANKRD20A5PA0PJZ0 165 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 UBE2QL1A1L167 161 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 MEIS3P1A6NDR6 274 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 PPIAL4DF5H284 164 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 H3BUI4 141 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 SH2D1BO14796 132 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 ZNF205O95201 554 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 F12P00748 615 aaPredicted RBP6.88□□□□□ -1.31
USP4-210ENST00000483212 IGHV2-70P01814 119 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 FCGR3AP08637 254 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 PPIAL4FP0DN26 164 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 IRF2P14316 349 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 PAX1P15863 534 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 EFNA4P52798 201 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 GNG2P59768 71 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 KRTAP10-9P60411 292 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 PAX5Q02548 391 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 COL10A1Q03692 680 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 SSBP1Q04837 148 aaKnown RBP6.88□□□□□ -1.31
USP4-210ENST00000483212 SCN1BQ07699 218 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 ASAH1Q13510 395 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 HFEQ30201 348 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 RSBN1Q5VWQ0 802 aaPredicted RBP6.88□□□□□ -1.31
USP4-210ENST00000483212 ZNF880Q6PDB4 577 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 C16orf87Q6PH81 154 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 DCDC5Q6ZRR9 648 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 TRAPPC6BQ86SZ2 158 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 HOGA1Q86XE5 327 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 OR8H2Q8N162 312 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 BPIFB2Q8N4F0 458 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 GVQW1Q8N7I0 195 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 MRPL30Q8TCC3 161 aaKnown RBP6.88□□□□□ -1.31
USP4-210ENST00000483212 SNAPC3Q92966 411 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 COQ2Q96H96 371 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 TMEM165Q9HC07 324 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 DLL4Q9NR61 685 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 ZNF701Q9NV72 531 aaPredicted RBP6.88□□□□□ -1.31
USP4-210ENST00000483212 DNAJB11Q9UBS4 358 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 OR14J1Q9UGF5 321 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 PPIAL4AQ9Y536 164 aa6.88□□□□□ -1.31
USP4-210ENST00000483212 IGKV1D-8A0A087WSZ0 117 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 TRAV38-1A0A0B4J264 116 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 ISPDA4D126 451 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 MCRIP1C9JLW8 97 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 K7N7A8 449 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 HSPB6O14558 160 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 SIGLEC5O15389 551 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 RBBP9O75884 186 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 IGHV4-39P01824 125 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 GYPAP02724 150 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 CD74P04233 296 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 CSN2P05814 226 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 SELLP14151 372 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 DAOP14920 347 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 DTYMKP23919 212 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 SSTR2P30874 369 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 BTCP35070 178 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 RCVRNP35243 200 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 BTG1P62324 171 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 ARFRP1Q13795 201 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 MICBQ29980 383 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 PAN3Q58A45 887 aaKnown RBP6.87□□□□□ -1.31
USP4-210ENST00000483212 TRIQKQ629K1 86 aa6.87□□□□□ -1.31
USP4-210ENST00000483212 HIST2H2BCQ6DN03 193 aa6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms