RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 hCG_1807616A0A1W2PRN6 198 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FAM90A10PA6NDY2 464 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FAM90A18PA6NE21 464 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FAM90A16PA6NEW6 464 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 TMEM235A6NFC5 223 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FAM90A20PA6NIJ5 464 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FAM90A8PA6NJQ4 464 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FAM90A7PA6NKC0 464 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FAM90A22PA8MWA6 464 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FAM90A12PA8MX19 464 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FAM90A5PA8MXJ8 464 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FAM90A23PA8MXZ1 464 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 SRRM5B3KS81 715 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.58□□□□□ -1.52
USP48-208ENST00000479177 MFNGO00587 321 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 GEMIN2O14893 280 aaKnown RBP5.58□□□□□ -1.52
USP48-208ENST00000479177 WNT9BO14905 357 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 CTDSPLO15194 276 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 SOCS1O15524 211 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 GSTZ1O43708 216 aaPredicted RBP5.58□□□□□ -1.52
USP48-208ENST00000479177 NXPH2O95156 264 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 HLA-DQB1P01920 261 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 CHRM2P08172 466 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FAM90A15PP0C7V4 464 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FAM90A13PP0C7W8 464 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FAM90A14PP0C7W9 464 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FAM90A24PP0C7X0 464 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 COX6B1P14854 86 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 HIST1H1DP16402 221 aaKnown RBP5.58□□□□□ -1.52
USP48-208ENST00000479177 PRKACAP17612 351 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 EGR1P18146 543 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 TNFRSF1AP19438 455 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 GABRR1P24046 479 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 CHATP28329 748 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 VEGFCP49767 419 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 SNU13P55769 128 aaKnown RBP5.58□□□□□ -1.52
USP48-208ENST00000479177 CCL8P80075 99 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 DGCR2P98153 550 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 HOXA4Q00056 320 aaPredicted RBP5.58□□□□□ -1.52
USP48-208ENST00000479177 TLE4Q04727 773 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 DCTN2Q13561 401 aaKnown RBP5.58□□□□□ -1.52
USP48-208ENST00000479177 TAF9Q16594 264 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 ZNF260Q3ZCT1 412 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 PYDC2Q56P42 97 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 PLAC9Q5JTB6 97 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 AGAP6Q5VW22 663 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 SIGIRRQ6IA17 410 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 DNM1P46Q6ZS02 220 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 LINC00596Q86U02 117 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 SNX29P2Q8IUI4 249 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 ZCCHC24Q8N2G6 241 aaKnown RBP5.58□□□□□ -1.52
USP48-208ENST00000479177 GCSAMQ8N6F7 178 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 GDPD1Q8N9F7 314 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 LRRC29Q8WV35 223 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 SMIM4Q8WVI0 70 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 ST8SIA4Q92187 359 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 GCDHQ92947 438 aaPredicted RBP5.58□□□□□ -1.52
USP48-208ENST00000479177 TRIM63Q969Q1 353 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 ERGIC1Q969X5 290 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 PHF21AQ96BD5 680 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 RAB3CQ96E17 227 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 CYYR1Q96J86 154 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 CCDC32Q9BV29 185 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 EGLN1Q9GZT9 426 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 CXorf56Q9H5V9 222 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 AUNIPQ9H7T9 357 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 IFT22Q9H7X7 185 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 SAP30LQ9HAJ7 183 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 PALMDQ9NP74 551 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.58□□□□□ -1.52
USP48-208ENST00000479177 RCC2Q9P258 522 aaKnown RBP5.58□□□□□ -1.52
USP48-208ENST00000479177 FBXO9Q9UK97 447 aaPredicted RBP5.58□□□□□ -1.52
USP48-208ENST00000479177 ST3GAL6Q9Y274 331 aa5.58□□□□□ -1.52
USP48-208ENST00000479177 FLNBO75369 2602 aaKnown RBP5.57□□□□□ -1.52
USP48-208ENST00000479177 H7C417 338 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 PDCD6O75340 191 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 UPK1BO75841 260 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 OR7C1O76099 320 aaPredicted RBP5.57□□□□□ -1.52
USP48-208ENST00000479177 LHBP01229 141 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 MELTFP08582 738 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 CSF3P09919 207 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 PTHLHP12272 177 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 IL7P13232 177 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 GNB3P16520 340 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 BLVRBP30043 206 aaPredicted RBP5.57□□□□□ -1.52
USP48-208ENST00000479177 CD80P33681 288 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 RBMXP38159 391 aaKnown RBP5.57□□□□□ -1.52
USP48-208ENST00000479177 TMEM50BP56557 158 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 GMFBP60983 142 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 MRPS10P82664 201 aaKnown RBP5.57□□□□□ -1.52
USP48-208ENST00000479177 PITPNAQ00169 270 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 IFITM3Q01628 133 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 ICAM4Q14773 271 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 ZNF146Q15072 292 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 ZNF181Q2M3W8 571 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 MPV17LQ2QL34 196 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 SMIM21Q3B7S5 101 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 RNASE12Q5GAN4 147 aaKnown RBP5.57□□□□□ -1.52
USP48-208ENST00000479177 SPIN3Q5JUX0 258 aa5.57□□□□□ -1.52
USP48-208ENST00000479177 TMEM200BQ69YZ2 307 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms