RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 H3BP45 60 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 C15orf65H3BRN8 121 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 M0QXV9 152 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 CDIPTO14735 213 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 IGKV1D-33P01593 117 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 IGKV1-33P01594 117 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 IGHMP01871 453 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 CECR9P0C854 216 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 SCGB1C2P0DMR2 95 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 PRPS1L1P21108 318 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 TGFBR2P37173 567 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 GCLMP48507 274 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 KCNJ3P48549 501 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 HADHBP55084 474 aaKnown RBP1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 TSPAN5P62079 268 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 BAXQ07812 192 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 STX3Q13277 289 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 IHHQ14623 411 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 TRAM1Q15629 374 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 TAF9Q16594 264 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 TMEM215Q68D42 235 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 AMMECR1LQ6DCA0 310 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 ERICH5Q6P6B1 374 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 DPPA2Q7Z7J5 298 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 MARCH3Q86UD3 253 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 OR4K17Q8NGC6 315 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 SCGB1C1Q8TD33 95 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 TMEM239Q8WW34 195 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 OTUB2Q96DC9 234 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 CATSPER2Q96P56 530 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 OLFM3Q96PB7 478 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 PITX2Q99697 317 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 SLC25A31Q9H0C2 315 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 TXNIPQ9H3M7 391 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 GOLPH3Q9H4A6 298 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 IFT46Q9NQC8 304 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 ASF1BQ9NVP2 202 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 MAT2BQ9NZL9 334 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 C14orf166Q9Y224 244 aaKnown RBP1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 ZBED9Q6R2W3 1325 aa1.36□□□□□ -2.19
CCDC88A-212ENST00000474059 TRAV8-3A0A0A6YYJ7 113 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 IGHV3-21A0A0B4J1V1 117 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 F5H5P2 479 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 F8VP50 259 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 K7ERS5 55 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 PLPP3O14495 311 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 LDOC1O95751 146 aaPredicted RBP1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 HLA-AP01891 365 aaKnown RBP1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 CGB3P0DN86 165 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 CGB7P0DN87 165 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 MLNP12872 115 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 GTF2F2P13984 249 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 CNTFRP26992 372 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 TSPOP30536 169 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 GTF2H1P32780 548 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 RPA3P35244 121 aaPredicted RBP1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 PLTPP55058 493 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 AQP5P55064 265 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 FOXA1P55317 472 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 HBG1P69891 147 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 HBG2P69892 147 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 CD164Q04900 197 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 TRIP13Q15645 432 aaPredicted RBP1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 CEACAM21Q3KPI0 293 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 KRTAP25-1Q3LHN0 102 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 PYDC2Q56P42 97 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 NXNL2Q5VZ03 156 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF470Q6ECI4 717 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 USP50Q70EL3 339 aaPredicted RBP1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 AHSA2Q719I0 299 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 COMTD1Q86VU5 262 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 SPERTQ8NA61 448 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 ACTL9Q8TC94 416 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 TWIST2Q8WVJ9 160 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 MAL2Q969L2 176 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 CCDC124Q96CT7 223 aaKnown RBP1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 SUCNR1Q9BXA5 334 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 MFSD1Q9H3U5 465 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 USH1CQ9Y6N9 552 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 SHROOM3Q8TF72 1996 aa1.35□□□□□ -2.19
CCDC88A-212ENST00000474059 SEC16AO15027 2179 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 ATRNO75882 1429 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 SPATA31E1Q6ZUB1 1445 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 IGHV2-26A0A0B4J1V2 119 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 A0A0B4J2C4 111 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 FAM25EA8MYX2 175 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 LEUTXA8MZ59 168 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 UBDO15205 165 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 PDCD6O75340 191 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 CPSF4O95639 269 aaKnown RBP1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 CA2P00918 260 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 IGHV3-53P01767 116 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 SLC2A1P11166 492 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 GABRA1P14867 456 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 ELK4P28324 431 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF83P51522 516 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 RAB25P57735 213 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 PRDX1Q06830 199 aaKnown RBP1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 TPBGQ13641 420 aa1.34□□□□□ -2.19
CCDC88A-212ENST00000474059 ZNF141Q15928 474 aa1.34□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms