RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 RIF1Q5UIP0 2472 aaKnown RBP16.37■□□□□ 0.21
VIM-203ENST00000469543 TRAV39A0A0B4J263 110 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 MED6O75586 246 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 PPYP01298 95 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 SP1P08047 785 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 ZNF883P0CG24 379 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 GNRHRP30968 328 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 NHLH2Q02577 135 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 HAGHLQ6PII5 290 aaPredicted RBP16.37■□□□□ 0.21
VIM-203ENST00000469543 MYPOPQ86VE0 399 aaPredicted RBP16.37■□□□□ 0.21
VIM-203ENST00000469543 NEK7Q8TDX7 302 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 TUBD1Q9UJT1 453 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 ZDHHC8Q9ULC8 765 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 MEMO1Q9Y316 297 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 PET100P0DJ07 73 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 WNT5AP41221 380 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 HERPUD1Q15011 391 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 SLC35G3Q8N808 338 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 SECTM1Q8WVN6 248 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 POM121L2Q96KW2 1035 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 IL36GQ9NZH8 169 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 CEP250Q9BV73 2442 aa16.37■□□□□ 0.21
VIM-203ENST00000469543 ARGFXA6NJG6 315 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 TNFSF12O43508 249 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 HOXA4Q00056 320 aaPredicted RBP16.36■□□□□ 0.21
VIM-203ENST00000469543 SPIN3Q5JUX0 258 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 WFDC1Q9HC57 220 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 GVINP1Q7Z2Y8 2422 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 IGKV1D-13A0A0B4J2D9 117 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 C9JQL5 133 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 F8W036 122 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 RHBDL1O75783 438 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 IGKV1-13P0DP09 117 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 SELEP16581 610 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 BLOC1S1P78537 153 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 STK11Q15831 433 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 OR2T2Q6IF00 324 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 CBLN2Q8IUK8 224 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 RDH5Q92781 318 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 MOB3AQ96BX8 217 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 DNAJB11Q9UBS4 358 aa16.36■□□□□ 0.21
VIM-203ENST00000469543 C1QL1O75973 258 aa16.35■□□□□ 0.21
VIM-203ENST00000469543 IL18BPO95998 194 aa16.35■□□□□ 0.21
VIM-203ENST00000469543 CEACAM21Q3KPI0 293 aa16.35■□□□□ 0.21
VIM-203ENST00000469543 PLA2G2CQ5R387 149 aa16.35■□□□□ 0.21
VIM-203ENST00000469543 ZDHHC23Q8IYP9 409 aa16.35■□□□□ 0.21
VIM-203ENST00000469543 UBALD1Q8TB05 177 aa16.35■□□□□ 0.21
VIM-203ENST00000469543 SPTBN2O15020 2390 aa16.35■□□□□ 0.21
VIM-203ENST00000469543 OTOGLQ3ZCN5 2332 aa16.35■□□□□ 0.21
VIM-203ENST00000469543 CD300LBA8K4G0 201 aa16.35■□□□□ 0.21
VIM-203ENST00000469543 CELA3BP08861 270 aa16.35■□□□□ 0.21
VIM-203ENST00000469543 MUC1P15941 1255 aaPredicted RBP16.35■□□□□ 0.21
VIM-203ENST00000469543 LIAT1Q6ZQX7 453 aa16.35■□□□□ 0.21
VIM-203ENST00000469543 LDLRAD3Q86YD5 345 aa16.35■□□□□ 0.21
VIM-203ENST00000469543 ARL11Q969Q4 196 aa16.35■□□□□ 0.21
VIM-203ENST00000469543 LINC00470Q9BZP3 86 aa16.35■□□□□ 0.21
VIM-203ENST00000469543 IGKV1-6A0A0C4DH72 117 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 RAB19A4D1S5 217 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 C21orf140B9A014 251 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 ATP6V1G2-DDX39BF2Z307 99 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 PRKACAP17612 351 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 CA6P23280 308 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 ECI1P42126 302 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 TMEM268Q5VZI3 342 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 ZNF818PQ6ZRF7 136 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 APOBEC3DQ96AK3 386 aaPredicted RBP16.34■□□□□ 0.21
VIM-203ENST00000469543 GALNT14Q96FL9 552 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 C18orf12Q96KH6 178 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 USB1Q9BQ65 265 aaKnown RBP16.34■□□□□ 0.21
VIM-203ENST00000469543 RHOFQ9HBH0 211 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 GLS2Q9UI32 602 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 ARHGAP21Q5T5U3 1957 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 HERV-K104P61576 105 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 SMCO1Q147U7 214 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 TMEM211Q6ICI0 200 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 MCEMP1Q8IX19 187 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 GCNT2Q8N0V5 402 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 SH3BGRL3Q9H299 93 aa16.34■□□□□ 0.21
VIM-203ENST00000469543 A0A1B0GV50 99 aa16.33■□□□□ 0.21
VIM-203ENST00000469543 RPL36A-HNRNPH2H7BZ11 118 aa16.33■□□□□ 0.21
VIM-203ENST00000469543 SLC10A1Q14973 349 aa16.33■□□□□ 0.21
VIM-203ENST00000469543 MAGT1Q9H0U3 335 aa16.33■□□□□ 0.21
VIM-203ENST00000469543 UQCC1Q9NVA1 299 aa16.33■□□□□ 0.21
VIM-203ENST00000469543 ABI3Q9P2A4 366 aa16.33■□□□□ 0.21
VIM-203ENST00000469543 SPRR3Q9UBC9 169 aa16.33■□□□□ 0.21
VIM-203ENST00000469543 DMXL2Q8TDJ6 3036 aa16.33■□□□□ 0.21
VIM-203ENST00000469543 NKX2-6A6NCS4 301 aa16.33■□□□□ 0.2
VIM-203ENST00000469543 HSD17B6O14756 317 aa16.33■□□□□ 0.2
VIM-203ENST00000469543 OR8U9P0C7N5 309 aa16.33■□□□□ 0.2
VIM-203ENST00000469543 NFYBP25208 207 aa16.33■□□□□ 0.2
VIM-203ENST00000469543 GLP1RP43220 463 aa16.33■□□□□ 0.2
VIM-203ENST00000469543 ERVS71-1P61550 626 aa16.33■□□□□ 0.2
VIM-203ENST00000469543 FBXW12Q6X9E4 464 aa16.33■□□□□ 0.2
VIM-203ENST00000469543 CCDC36Q8IYA8 594 aa16.33■□□□□ 0.2
VIM-203ENST00000469543 GAPTQ8N292 157 aa16.33■□□□□ 0.2
VIM-203ENST00000469543 OR8U1Q8NH10 309 aa16.33■□□□□ 0.2
VIM-203ENST00000469543 C3orf85A0A1B0GTC6 90 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 MPPED1O15442 326 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 CST4P01036 141 aa16.32■□□□□ 0.2
VIM-203ENST00000469543 TBC1D26Q86UD7 250 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms