RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 LINC00596Q86U02 117 aa11.92□□□□□ -0.5
SQSTM1-205ENST00000464493 BPIFB2Q8N4F0 458 aa11.92□□□□□ -0.5
SQSTM1-205ENST00000464493 MRPS24Q96EL2 167 aaKnown RBP11.92□□□□□ -0.5
SQSTM1-205ENST00000464493 C1orf147Q96MC9 270 aaPredicted RBP11.92□□□□□ -0.5
SQSTM1-205ENST00000464493 PPA2Q9H2U2 334 aa11.92□□□□□ -0.5
SQSTM1-205ENST00000464493 METTL8Q9H825 291 aaKnown RBP11.92□□□□□ -0.5
SQSTM1-205ENST00000464493 AK6Q9Y3D8 172 aaKnown RBP11.92□□□□□ -0.5
SQSTM1-205ENST00000464493 TRAV1-2A0A0B4J238 106 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 hCG_1809904A0A1W2PP81 198 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 A0A1W2PPE2 198 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 A0A1W2PR64 198 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 A0A1W2PRV1 198 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 hADV38S2A0JD32 116 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 FUOMA2VDF0 154 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 GEMIN2O14893 280 aaKnown RBP11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 CRTAPO75718 401 aaPredicted RBP11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 OR7C1O76099 320 aaPredicted RBP11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 CSN2P05814 226 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 UBBP0CG47 229 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 CCL3L1P16619 93 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 PRTN3P24158 256 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 HTR2CP28335 458 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 PSMD7P51665 324 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 P2RX3P56373 397 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 AESQ08117 197 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 ZNF273Q14593 569 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 MPV17LQ2QL34 196 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 PAN3Q58A45 887 aaKnown RBP11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 BRD3OSQ6XYD6 125 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 BCL6BQ8N143 479 aaPredicted RBP11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 TPRX1Q8N7U7 411 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 ZNF418Q8TF45 676 aaPredicted RBP11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 GFI1Q99684 422 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 SLC6A7Q99884 636 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 BANF2Q9H503 90 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 ZNF696Q9H7X3 374 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 IFT22Q9H7X7 185 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 UNKLQ9H9P5 680 aaKnown RBP11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 VCX3AQ9NNX9 186 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 SIRT7Q9NRC8 400 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 STUB1Q9UNE7 303 aa11.91□□□□□ -0.5
SQSTM1-205ENST00000464493 HSPB6O14558 160 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 SLC22A1O15245 554 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 TCF21O43680 179 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 MGMTP16455 207 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 MYL9P24844 172 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 PRB3Q04118 309 aaPredicted RBP11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 TAF9Q16594 264 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 KRTAP21-3Q3LHN1 58 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 KRBOX4Q5JUW0 171 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 C22orf42Q6IC83 251 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 METAP1DQ6UB28 335 aaPredicted RBP11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 C9orf139Q6ZV77 190 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 PDZD9Q8IXQ8 264 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 C11orf42Q8N5U0 333 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 TMEM104Q8NE00 496 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 OR6M1Q8NGM8 313 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 TNFRSF14Q92956 283 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 SUCNR1Q9BXA5 334 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 SELENOIQ9C0D9 397 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 CST11Q9H112 138 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 PLGRKTQ9HBL7 147 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 ZNF581Q9P0T4 197 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 SSR3Q9UNL2 185 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 LINC00312Q9Y6C7 94 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 V9GY05 133 aa11.9□□□□□ -0.5
SQSTM1-205ENST00000464493 ATRQ13535 2644 aa11.9□□□□□ -0.51
SQSTM1-205ENST00000464493 A0A0A6YYJ9 748 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 IGHV1-69DA0A0B4J2H0 117 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 MEX3AA1L020 520 aaKnown RBP11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 C17orf98A8MV24 154 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 RNASEK-C17orf49H0YIS7 233 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 SLC17A2O00624 439 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 PDCD5O14737 125 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 IGHV1-69P01742 117 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 ZNF728P0DKX0 622 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 VSIG8P0DPA2 414 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 CD36P16671 472 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 FGF9P31371 208 aaPredicted RBP11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 GLIPR1P48060 266 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 KCNJ3P48549 501 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 DLX1P56177 255 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 DLX6P56179 175 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 ERVFRD-1P60508 538 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 GUCA2AQ02747 115 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 ATXN7L3Q14CW9 347 aaPredicted RBP11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 ATAD3CQ5T2N8 411 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 RUSC1-AS1Q66K80 236 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 NCR3LG1Q68D85 454 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 USP43Q70EL4 1123 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 SUMF2Q8NBJ7 301 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 FAM46BQ96A09 425 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 SLC25A28Q96A46 364 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 COQ2Q96H96 371 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 ZNF714Q96N38 554 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 DPCDQ9BVM2 203 aaPredicted RBP11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 BARHL1Q9BZE3 327 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 TXNL4BQ9NX01 149 aaKnown RBP11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 ING3Q9NXR8 418 aa11.89□□□□□ -0.51
SQSTM1-205ENST00000464493 SOX21Q9Y651 276 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms