RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 SERINC4A6NH21 518 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 IFITM5A6NNB3 132 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 B4DGG1 531 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 ETV2O00321 342 aaPredicted RBP4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 SAP18O00422 153 aaKnown RBP4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 HMGB3O15347 200 aaKnown RBP4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 MT-CO3P00414 261 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 PSG2P11465 335 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 AGTR1P30556 359 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 SULT1A1P50225 295 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 SULT1A2P50226 295 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 RAB10P61026 200 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 OSTNP61366 133 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 BCL2L1Q07817 233 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 UPP1Q16831 310 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 IQCJQ1A5X6 159 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 TMEM97Q5BJF2 176 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 DCST2Q5T1A1 773 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 OTUD3Q5T2D3 398 aaPredicted RBP4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 C6orf120Q7Z4R8 191 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 GPD1LQ8N335 351 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 SPEM1Q8N4L4 309 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 STPG4Q8N801 248 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 C5orf17Q8NAS9 161 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 VN1R2Q8NFZ6 395 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 OR4F6Q8NGB9 312 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 OR1J2Q8NGS2 313 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 IL22RA2Q969J5 263 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 PKMYT1Q99640 499 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 MGLLQ99685 303 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 FAM234AQ9H0X4 552 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 POMKQ9H5K3 350 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 POPDC3Q9HBV1 291 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 SLC25A37Q9NYZ2 338 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 OR5AC2Q9NZP5 309 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 SLC23A2Q9UGH3 650 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 OTOGLQ3ZCN5 2332 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 DMDP11532 3685 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 KIR2DS5A0A0G2JLQ3 304 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A0G2JNG1 304 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 C2CD4BA6NLJ0 364 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 PIRO00625 290 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 SYNGR4O95473 234 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 HBZP02008 142 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 P04436 131 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 NGFRP08138 427 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 GKN3PP0CG01 181 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 LAMP1P11279 417 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF19P17023 458 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 USF1P22415 310 aaPredicted RBP4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 PRTN3P24158 256 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 CRYBB2P43320 205 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 AQP5P55064 265 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 TMEM50BP56557 158 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 CLDN20P56880 219 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 POLR2LP62875 67 aaKnown RBP4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 KIR2DS5Q14953 304 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 OR8B8Q15620 311 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 SLC25A52Q3SY17 297 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 FAM182AQ5T1J6 154 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 PLPP4Q5VZY2 271 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 LYSMD4Q5XG99 296 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 STUMQ69YW2 141 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 TOMM20LQ6UXN7 152 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF66Q6ZN08 573 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 PTAR1Q7Z6K3 402 aaPredicted RBP4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 OAFQ86UD1 273 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 CALHM3Q86XJ0 350 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 BEST3Q8N1M1 668 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF485Q8NCK3 441 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 GPR32P1Q8NGA4 272 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 OR5A2Q8NGI9 324 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 OR13C6PQ8NH95 151 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 VN1R17PQ8TDU5 208 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 GRAMD2BQ96HH9 432 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 CCDC115Q96NT0 180 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 DOHHQ9BU89 302 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 TAPBPLQ9BX59 468 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 OR51J1Q9H342 316 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 TUBB1Q9H4B7 451 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 BPIFA1Q9NP55 256 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 ARMCX1Q9P291 453 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 SNX10Q9Y5X0 201 aa4.11□□□□□ -1.75
CCDC88A-209ENST00000456975 PDCD11Q14690 1871 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A0D9SG52 128 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 A0A0G2JLM5 398 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 TMEM189A5PLL7 270 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 CASTOR2A6NHX0 329 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 MSGN1A6NI15 193 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 SULT2B1O00204 365 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 UPK1AO00322 258 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF207O43670 478 aaKnown RBP4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 ZG16O60844 167 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 CRYAAP02489 173 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 SEMG1P04279 462 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 LIMS3P0CW19 117 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 LIMS4P0CW20 117 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 OR12D1P0DN82 309 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 NPY1RP25929 384 aa4.1□□□□□ -1.75
CCDC88A-209ENST00000456975 HTR1EP28566 365 aa4.1□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms