RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 SAXO1Q8IYX7 474 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 PRSS35Q8N3Z0 413 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 OR9G1Q8NH87 305 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 CHPT1Q8WUD6 406 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 RPEQ96AT9 228 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 OPALINQ96PE5 141 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 BARHL1Q9BZE3 327 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 IL36RNQ9UBH0 155 aa10.59□□□□□ -0.71
HMGB3-204ENST00000448905 AMMECR1Q9Y4X0 333 aaPredicted RBP10.59□□□□□ -0.71
HMGB3-204ENST00000448905 IGKV1-9A0A0C4DH69 117 aa10.58□□□□□ -0.72
HMGB3-204ENST00000448905 WI2-2373I1.2A0A1W2PRP0 233 aa10.58□□□□□ -0.72
HMGB3-204ENST00000448905 ODAMA1E959 279 aa10.58□□□□□ -0.72
HMGB3-204ENST00000448905 ZNF729A6NN14 1252 aaPredicted RBP10.58□□□□□ -0.72
HMGB3-204ENST00000448905 CSN2P05814 226 aa10.58□□□□□ -0.72
HMGB3-204ENST00000448905 NFYBP25208 207 aa10.58□□□□□ -0.72
HMGB3-204ENST00000448905 EPHA2P29317 976 aa10.58□□□□□ -0.72
HMGB3-204ENST00000448905 KRTAP10-11P60412 298 aa10.58□□□□□ -0.72
HMGB3-204ENST00000448905 EGFEM1PQ0D2K5 195 aa10.58□□□□□ -0.72
HMGB3-204ENST00000448905 ATP6AP1Q15904 470 aa10.58□□□□□ -0.72
HMGB3-204ENST00000448905 ADAT3Q96EY9 351 aaPredicted RBP10.58□□□□□ -0.72
HMGB3-204ENST00000448905 MRPL48Q96GC5 212 aaKnown RBP10.58□□□□□ -0.72
HMGB3-204ENST00000448905 ZNF649Q9BS31 505 aa10.58□□□□□ -0.72
HMGB3-204ENST00000448905 ING3Q9NXR8 418 aa10.58□□□□□ -0.72
HMGB3-204ENST00000448905 MOB4Q9Y3A3 225 aa10.58□□□□□ -0.72
HMGB3-204ENST00000448905 HSPE1-MOB4S4R3N1 261 aa10.58□□□□□ -0.72
HMGB3-204ENST00000448905 KMT2CQ8NEZ4 4911 aaKnown RBP10.57□□□□□ -0.72
HMGB3-204ENST00000448905 A0A087X0M5 115 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 KBTBD11-OT1A0A1B0GTJ5 212 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 A0A1B0GX30 115 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 DAPL1A0PJW8 107 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 NUDT19A8MXV4 375 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 LY6LH3BQJ8 138 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 KDM4BO94953 1096 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 APOL3O95236 402 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 MT-ND2P03891 347 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 TMEM225BP0DP42 221 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 DBTP11182 482 aaKnown RBP10.57□□□□□ -0.72
HMGB3-204ENST00000448905 HOXD3P31249 432 aaPredicted RBP10.57□□□□□ -0.72
HMGB3-204ENST00000448905 MYCNOSP40205 109 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 CCR9P51686 369 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 GP2P55259 537 aaKnown RBP10.57□□□□□ -0.72
HMGB3-204ENST00000448905 HES1Q14469 280 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 TP53I3Q53FA7 332 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 MRPL41Q8IXM3 137 aaKnown RBP10.57□□□□□ -0.72
HMGB3-204ENST00000448905 COMMD1Q8N668 190 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 LINC00482Q8N8I6 264 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 OR5D14Q8NGL3 314 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 OR13C3Q8NGS6 347 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 OR2G2Q8NGZ5 317 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 HAVCR2Q8TDQ0 301 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 TRUB1Q8WWH5 349 aaKnown RBP10.57□□□□□ -0.72
HMGB3-204ENST00000448905 TOMM40LQ969M1 308 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 WWC2-AS2Q96NR7 200 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 B9D2Q9BPU9 175 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 COMMD4Q9H0A8 199 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 ZNF286AQ9HBT8 521 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 FRRS1LQ9P0K9 344 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 AP4S1Q9Y587 144 aa10.57□□□□□ -0.72
HMGB3-204ENST00000448905 FAM172BPA6NC97 362 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 SNTNA6NMZ2 147 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 SERPINE3A8MV23 424 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 AMY1AP04745 511 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 AMY2AP04746 511 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 HTR1AP08908 422 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 NHLRC4P0CG21 123 aaPredicted RBP10.56□□□□□ -0.72
HMGB3-204ENST00000448905 FCGR1AP12314 374 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 RAB7AP51149 207 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 MADCAM1Q13477 382 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 BAIAP2L2Q6UXY1 529 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 SLC16A12Q6ZSM3 486 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 ZNF329Q86UD4 541 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 FOXRED2Q8IWF2 684 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 RFT1Q96AA3 541 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 EME1Q96AY2 570 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 CPNE2Q96FN4 548 aaPredicted RBP10.56□□□□□ -0.72
HMGB3-204ENST00000448905 MBOAT4Q96T53 435 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 OSBPL10Q9BXB5 764 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 GON7Q9BXV9 100 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 NCOR1P1Q9H4R4 102 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 ZCCHC4Q9H5U6 513 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 IMPAD1Q9NX62 359 aa10.56□□□□□ -0.72
HMGB3-204ENST00000448905 NBEAL2Q6ZNJ1 2754 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 MEIKINA0A087WXM9 373 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 SH2D7A6NKC9 451 aaPredicted RBP10.55□□□□□ -0.72
HMGB3-204ENST00000448905 J3QR06 171 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 SLC16A6O15403 523 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 MAGEB3O15480 346 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 RAMP3O60896 148 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 VSIG8P0DPA2 414 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 TMEM11P17152 192 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 KIR3DL2P43630 455 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 THBS3P49746 956 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 RASSF2P50749 326 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 ISL1P61371 349 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 DGCR2P98153 550 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 ZNF85Q03923 595 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 FDX2Q6P4F2 183 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 C10orf99Q6UWK7 81 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 SERPINA12Q8IW75 414 aa10.55□□□□□ -0.72
HMGB3-204ENST00000448905 OR5D18Q8NGL1 313 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms