RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 TMEM82A0PJX8 343 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 SAC3D1A6NKF1 404 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 ZNF729A6NN14 1252 aaPredicted RBP6.27□□□□□ -1.41
CD44-211ENST00000442151 ENTPD6O75354 484 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 DUS4LO95620 317 aaKnown RBP6.27□□□□□ -1.41
CD44-211ENST00000442151 TSPAN15O95858 294 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 CSN2P05814 226 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 HCKP08631 526 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 EPHA2P29317 976 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 PTGFRP43088 359 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 DLX1P56177 255 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 ZNF85Q03923 595 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 RAB40BQ12829 278 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 FBLN7Q53RD9 439 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 DMRTC1Q5HYR2 192 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 CCDC121Q6ZUS5 278 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 SSX6Q7RTT6 188 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 PRSS35Q8N3Z0 413 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 OR10A7Q8NGE5 316 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 OR5AK2Q8NH90 309 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 PIFOQ8TCI5 191 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 JAM3Q9BX67 310 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 CHCHD3Q9NX63 227 aaKnown RBP6.27□□□□□ -1.41
CD44-211ENST00000442151 FRRS1LQ9P0K9 344 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 DHDHQ9UQ10 334 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 TENM1Q9UKZ4 2725 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 FAM90A22PA8MWA6 464 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 FAM229AH3BQW9 127 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 M0R129 80 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 ALPLP05186 524 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 LPLP06858 475 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 BCL3P20749 454 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 CD34P28906 385 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 SCN1BQ07699 218 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 KRBOX4Q5JUW0 171 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 LPCAT4Q643R3 524 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 TMPRSS11AQ6ZMR5 421 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 LHFPL4Q7Z7J7 247 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 THNSL2Q86YJ6 484 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 ZNF555Q8NEP9 628 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 PXT1Q8NFP0 134 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 OR4X2Q8NGF9 303 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 R3HDM4Q96D70 268 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 GPER1Q99527 375 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 ALG8Q9BVK2 526 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 ZNF702PQ9H963 129 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 C8orf4Q9NR00 106 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 HILPDAQ9Y5L2 63 aa6.27□□□□□ -1.41
CD44-211ENST00000442151 IGKV1-27A0A075B6S5 117 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 SIRPB1O00241 398 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 SULT1B1O43704 296 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 OR2H2O95918 312 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 RAB3AP20336 220 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 GZMHP20718 246 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 POLR2IP36954 125 aaKnown RBP6.26□□□□□ -1.41
CD44-211ENST00000442151 KIR3DL2P43630 455 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 NPBWR2P48146 333 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 DCTN2Q13561 401 aaKnown RBP6.26□□□□□ -1.41
CD44-211ENST00000442151 GPR176Q14439 515 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 IL13RA2Q14627 380 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 NSUN5P1Q3KNT7 163 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 CCDC58Q4VC31 144 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 ZNF691Q5VV52 312 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 RDH10Q8IZV5 341 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 BATF2Q8N1L9 274 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 OR52N4Q8NGI2 321 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 TSEN15Q8WW01 171 aaKnown RBP6.26□□□□□ -1.41
CD44-211ENST00000442151 C17orf50Q8WW18 174 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 ADAT3Q96EY9 351 aaPredicted RBP6.26□□□□□ -1.41
CD44-211ENST00000442151 C4orf36Q96KX1 117 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 RDH12Q96NR8 316 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 CHST6Q9GZX3 395 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 SERTAD4Q9NUC0 356 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 RBFOX1Q9NWB1 397 aaKnown RBP6.26□□□□□ -1.41
CD44-211ENST00000442151 FAM118AQ9NWS6 357 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 FOXJ3Q9UPW0 622 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 SIGLEC9Q9Y336 463 aa6.26□□□□□ -1.41
CD44-211ENST00000442151 TSSC4Q9Y5U2 329 aaPredicted RBP6.26□□□□□ -1.41
CD44-211ENST00000442151 ODAMA1E959 279 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 OR4C45A6NMZ5 311 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 H3BSH0 61 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 J3QRE1 110 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 ZNF780AO75290 641 aaPredicted RBP6.25□□□□□ -1.41
CD44-211ENST00000442151 OR2F2O95006 317 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 APOL3O95236 402 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 CSTBP04080 98 aaKnown RBP6.25□□□□□ -1.41
CD44-211ENST00000442151 PF4V1P10720 104 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 CD33P20138 364 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 CDK2P24941 298 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 SLC6A1P30531 599 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 OR3A1P47881 315 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 RAB7AP51149 207 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 PPP3R1P63098 170 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 RSU1Q15404 277 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 KISS1Q15726 138 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 PLA1AQ53H76 456 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 KPRPQ5T749 579 aaPredicted RBP6.25□□□□□ -1.41
CD44-211ENST00000442151 LCE5AQ5TCM9 118 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 ELP2Q6IA86 826 aa6.25□□□□□ -1.41
CD44-211ENST00000442151 LINC00596Q86U02 117 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms