RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 FGF8P55075 233 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 SKP2Q13309 424 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 CARFQ8N187 725 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 ABHD3Q8WU67 409 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 RAB18Q9NP72 206 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 SNRPGP15A8MWD9 76 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 TFAP2AP05549 437 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 CLDN20P56880 219 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 TRBV23-1A0A0A0MS06 115 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 ACTL6AO96019 429 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 PMCHP20382 165 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 BAK1Q16611 211 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 PRDM7Q9NQW5 492 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 SIRT3Q9NTG7 399 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 UQCC1Q9NVA1 299 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 SIGLEC7Q9Y286 467 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 NCOA6Q14686 2063 aaPredicted RBP10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 NUBPLQ8TB37 319 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 DIRC2Q96SL1 478 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 OR5AC1P0C628 307 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 RIMKLAQ8IXN7 391 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 MOGAT1Q96PD6 335 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 SH2D2AQ9NP31 389 aa10.68□□□□□ -0.7
CCDC88A-207ENST00000436346 OBSL1O75147 1896 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 PATE4P0C8F1 98 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 RD3LP0DJH9 198 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 CTLA4P16410 223 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 RHBDD2Q6NTF9 364 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 ZNF547Q8IVP9 402 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 LINC00052Q96N35 136 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 NXF2Q9GZY0 626 aaKnown RBP10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 SLC17A2O00624 439 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 CPN1P15169 458 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 PRSS42Q7Z5A4 293 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 MBD1Q9UIS9 605 aaPredicted RBP10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 RHOFQ9HBH0 211 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 SMIM18P0DKX4 95 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 SPNS2Q8IVW8 549 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 SLC17A5Q9NRA2 495 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 SORL1Q92673 2214 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 IGLV3-16A0A075B6K0 115 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 DOLPP1Q86YN1 238 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 RASL10BQ96S79 203 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 PRR14LQ5THK1 2151 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 TRDCB7Z8K6 153 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 SPINK4O60575 86 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 ZFPL1O95159 310 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 RAC3P60763 192 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 FAM219BQ5XKK7 198 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 CCL19Q99731 98 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 IGHA1P01876 353 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 IGHA2P01877 340 aa10.67□□□□□ -0.7
CCDC88A-207ENST00000436346 C3orf85A0A1B0GTC6 90 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 HIST1H1DP16402 221 aaKnown RBP10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 PRSS12P56730 875 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 LSM11P83369 360 aaKnown RBP eCLIP10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 CLEC2AQ6UVW9 174 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 TCTE3Q8IZS6 198 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 OR6X1Q8NH79 312 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 RNF2Q99496 336 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 IL20Q9NYY1 176 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 HTR1DP28221 377 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 CD200P41217 278 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 OR8B12Q8NGG6 310 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 SEMA7AO75326 666 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 AREGP15514 252 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 RHNO1Q9BSD3 238 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 NAAAQ02083 359 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 KIAA1958Q8N8K9 716 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 RAB40CQ96S21 281 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 ABHD14AQ9BUJ0 271 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 DNPH1O43598 174 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 ZNF737O75373 536 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 PNPP00491 289 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 OR4A8P0C604 315 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 CD37P11049 281 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 KCNJ3P48549 501 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 SELENOPP49908 381 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 SLC45A2Q9UMX9 530 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 PTPRQQ9UMZ3 2332 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 USF1P22415 310 aaPredicted RBP10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 ARRDC1Q8N5I2 433 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 CNTD2Q9H8S5 307 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 NEURL1O76050 574 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 PCGF1Q9BSM1 259 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 DUSP15Q9H1R2 295 aaPredicted RBP10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 SLC16A12Q6ZSM3 486 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 PIK3IP1Q96FE7 263 aa10.66□□□□□ -0.7
CCDC88A-207ENST00000436346 PGA3P0DJD8 388 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 CCL4P13236 92 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 PRF1P14222 555 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 SLC7A10Q9NS82 523 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 TMED3Q9Y3Q3 217 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 GNG7O60262 68 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 ICMTO60725 284 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 DRD3P35462 400 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 ASCL3Q9NQ33 180 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 NAT8BQ9UHF3 227 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 RABAC1Q9UI14 185 aa10.65□□□□□ -0.7
CCDC88A-207ENST00000436346 CADM3Q8N126 398 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms