RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 Q6ZSR3 168 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 VASH2Q86V25 355 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 C17orf78Q8N4C9 275 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 ZFP62Q8NB50 900 aaPredicted RBP6.17□□□□□ -1.42
COL28A1-202ENST00000430711 FAM213BQ8TBF2 198 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 SAP25Q8TEE9 199 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 HES7Q9BYE0 225 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 EGLN1Q9GZT9 426 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 SH2D2AQ9NP31 389 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 BIN3Q9NQY0 253 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 GHRLQ9UBU3 117 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 ST3GAL6Q9Y274 331 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 HDGFL3Q9Y3E1 203 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 MMP24Q9Y5R2 645 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 FASNP49327 2511 aaKnown RBP6.17□□□□□ -1.42
COL28A1-202ENST00000430711 A0A096LPE4 126 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 ARPC4-TTLL3A0A0A6YYG9 625 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 hCG_38984A0A1B0GV85 526 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 A0A1W2PPZ6 126 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 H0YL77 283 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 M0R036 132 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 RRP8O43159 456 aaKnown RBP6.17□□□□□ -1.42
COL28A1-202ENST00000430711 CLN5O75503 358 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 MSX1P28360 303 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 GNRHRP30968 328 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 HTR5AP47898 357 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 CEBPGP53567 150 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 EWSR1Q01844 656 aaKnown RBP eCLIP6.17□□□□□ -1.42
COL28A1-202ENST00000430711 CEACAM16Q2WEN9 425 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 HLA-BQ31612 363 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 TRIM61Q5EBN2 209 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 ACER2Q5QJU3 275 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 ADAM5Q6NVV9 412 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 ZNF818PQ6ZRF7 136 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 SLC25A26Q70HW3 274 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 SSX7Q7RTT5 188 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 KMT5CQ86Y97 462 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 SPEM1Q8N4L4 309 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 TMEM217Q8N7C4 229 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 UBAC2Q8NBM4 344 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 OR5L2Q8NGL0 311 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 PLPPR1Q8TBJ4 325 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 PIGCQ92535 297 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 RBMXL1Q96E39 390 aaKnown RBP6.17□□□□□ -1.42
COL28A1-202ENST00000430711 YPEL4Q96NS1 127 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 S100A13Q99584 98 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 PHF7Q9BWX1 381 aaPredicted RBP6.17□□□□□ -1.42
COL28A1-202ENST00000430711 PRRG4Q9BZD6 226 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 EIF5A2Q9GZV4 153 aaKnown RBP6.17□□□□□ -1.42
COL28A1-202ENST00000430711 SLC7A10Q9NS82 523 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 C19orf12Q9NSK7 152 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 TMEM38BQ9NVV0 291 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 EDARQ9UNE0 448 aa6.17□□□□□ -1.42
COL28A1-202ENST00000430711 TNRC6BQ9UPQ9 1833 aaKnown RBP6.17□□□□□ -1.42
COL28A1-202ENST00000430711 PQLC2LA1A4F0 135 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 OR6C6A6NF89 314 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 LRRC3CA6NJW4 275 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 UMAD1C9J7I0 102 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 RNF223E7ERA6 249 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 H7C1Q1 480 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 K7N7A8 449 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 TXNL1O43396 289 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 SSSCA1O60232 199 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 OR7C1O76099 320 aaPredicted RBP6.16□□□□□ -1.42
COL28A1-202ENST00000430711 YIF1AO95070 293 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 TSPAN15O95858 294 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 CXCL1P09341 107 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 BCL3P20749 454 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 AGAP20933 346 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 PTAFRP25105 342 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 CAMLGP49069 296 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 SULT1A1P50225 295 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 ZNF133P52736 654 aaPredicted RBP6.16□□□□□ -1.42
COL28A1-202ENST00000430711 RPS23P62266 143 aaKnown RBP6.16□□□□□ -1.42
COL28A1-202ENST00000430711 HNF4GQ14541 408 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 C3AR1Q16581 482 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 FAM76BQ5HYJ3 339 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 FBXW12Q6X9E4 464 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 LIAT1Q6ZQX7 453 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 LURAP1LQ8IV03 231 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 MAML2Q8IZL2 1156 aaPredicted RBP6.16□□□□□ -1.42
COL28A1-202ENST00000430711 TMEM105Q8N8V8 129 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 OR4D5Q8NGN0 318 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 OR1F12Q8NHA8 337 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 CD300LFQ8TDQ1 290 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 PP6455Q8WZ26 134 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 BOD1Q96IK1 185 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 GINS3Q9BRX5 216 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 ANGPTL4Q9BY76 406 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 OR51B6Q9H340 312 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 GSN-AS1Q9NRJ2 163 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 DKKL1Q9UK85 242 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 PUS1Q9Y606 427 aaKnown RBP eCLIP6.16□□□□□ -1.42
COL28A1-202ENST00000430711 COL27A1Q8IZC6 1860 aaPredicted RBP6.16□□□□□ -1.42
COL28A1-202ENST00000430711 LOC102725191A0A1B0GVB3 256 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 PPIHO43447 177 aaKnown RBP6.16□□□□□ -1.42
COL28A1-202ENST00000430711 NRASP01111 189 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 NGFP01138 241 aa6.16□□□□□ -1.42
COL28A1-202ENST00000430711 GAPDHP04406 335 aaKnown RBP6.16□□□□□ -1.42
COL28A1-202ENST00000430711 MDKP21741 143 aaPredicted RBP6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms