RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 NDUFA13Q9P0J0 144 aa2.21□□□□□ -2.06
CCDC88A-205ENST00000426576 NAGKQ9UJ70 344 aa2.21□□□□□ -2.06
CCDC88A-205ENST00000426576 EXOGQ9Y2C4 368 aaKnown RBP2.21□□□□□ -2.06
CCDC88A-205ENST00000426576 SOX21Q9Y651 276 aaPredicted RBP2.21□□□□□ -2.06
CCDC88A-205ENST00000426576 GMEB1Q9Y692 573 aa2.21□□□□□ -2.06
CCDC88A-205ENST00000426576 COL5A1P20908 1838 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 A0A0G2JPF8 293 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 TCRBV16S1A1N1A0A5B0 115 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 LIPT2A6NK58 231 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 B4DXG7 233 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 HNRNPCL3B7ZW38 293 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 F5H5P2 479 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 SIVA1O15304 175 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 HNRNPCL4P0DMR1 293 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 CTLA4P16410 223 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF708P17019 499 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 SELENOTP62341 195 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 MRPS34P82930 218 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 PRDX4Q13162 271 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 KLRD1Q13241 179 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 ADIPOQQ15848 244 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 BEAN1Q3B7T3 259 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 LIN52Q52LA3 116 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF789Q5FWF6 425 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 TCTEX1D4Q5JR98 221 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 ELFN2Q5R3F8 820 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 PRAMEF5Q5TYX0 476 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 FRG2Q64ET8 278 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 C11orf63Q6NUN7 778 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 Q6YL49 198 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 MICU2Q8IYU8 434 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 OR8I2Q8N0Y5 310 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 SLC22A24Q8N4F4 322 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 EIF4E3Q8N5X7 224 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 RASSF5Q8WWW0 418 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 CRYGNQ8WXF5 182 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 ARL11Q969Q4 196 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 C7orf34Q96L11 122 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 FRG2BQ96QU4 278 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 MROQ9BYG7 248 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 COMMD4Q9H0A8 199 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 TLNRD1Q9H1K6 362 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 ESM1Q9NQ30 184 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 MAGEL2Q9UJ55 1249 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 PRDM4Q9UKN5 801 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 CNOT11Q9UKZ1 510 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 GSTK1Q9Y2Q3 226 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 COL4A5P29400 1685 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 TNRC18O15417 2968 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV4-4A0A075B6R2 117 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV3-35A0A0C4DH35 117 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 IGKV2-24A0A0C4DH68 120 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 XKRY2A2RUG3 117 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 PAX4O43316 350 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 SSX5O60225 188 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 FCGR3AP08637 254 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 PTMSP20962 102 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 EVX1P49640 407 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 HMGA2P52926 109 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 GNG3P63215 75 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 CDK6Q00534 326 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 PRB3Q04118 309 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF91Q05481 1191 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 FHL1Q13642 323 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 CCDC92Q53HC0 331 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 THOC7Q6I9Y2 204 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF774Q6NX45 483 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 IGFL2Q6UWQ7 119 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 IZUMO2Q6UXV1 221 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 C19orf35Q6ZS72 473 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 MAVSQ7Z434 540 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 NRMQ8IXM6 262 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 OFCC1Q8IZS5 231 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 BPIFB6Q8NFQ5 453 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 OR1K1Q8NGR3 316 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 IGFBPL1Q8WX77 278 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 HGDQ93099 445 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 BORCS5Q969J3 196 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 CMTM5Q96DZ9 223 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 PPP3R2Q96LZ3 170 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 DESI2Q9BSY9 194 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 RETNQ9HD89 108 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 MID1IP1Q9NPA3 183 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 POLE3Q9NRF9 147 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 FGFR1OP2Q9NVK5 253 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 XCL2Q9UBD3 114 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 MRM2Q9UI43 246 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 TCF19Q9Y242 345 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 SIGLEC7Q9Y286 467 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 FRYLO94915 3013 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 M0QX08 132 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 MFSD11O43934 449 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 TRMUO75648 421 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 DIRAS3O95661 229 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF682O95780 498 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 ATP1B1P05026 303 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 CSN3P07498 182 aa2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 IL6RP08887 468 aaPredicted RBP2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 PPIBP23284 216 aaKnown RBP2.2□□□□□ -2.06
CCDC88A-205ENST00000426576 NPPCP23582 126 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms