RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 E9PI62 339 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 SLC33A1O00400 549 aaPredicted RBP9.22□□□□□ -0.93
USP4-204ENST00000416417 EI24O14681 340 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 IGLV1-47P01700 117 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 TMEM225BP0DP42 221 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 FCGR1AP12314 374 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 BDH1Q02338 343 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 TMED1Q13445 227 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 IL18R1Q13478 541 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 C17orf58Q2M2W7 97 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 KRBOX4Q5JUW0 171 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 REC114Q7Z4M0 266 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 CAPSLQ8WWF8 208 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 CORO2AQ92828 525 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 SPSB1Q96BD6 273 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 LGALS12Q96DT0 336 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 ZNF581Q9P0T4 197 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 HHLA2Q9UM44 414 aa9.22□□□□□ -0.93
USP4-204ENST00000416417 LEUTXA8MZ59 168 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 BUB1B-PAK6H3BSN5 160 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 TOR1AO14656 332 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 DEGS1O15121 323 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 PF4P02776 101 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 ALDOBP05062 364 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 ISG15P05161 165 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 HCKP08631 526 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 BRS3P32247 399 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 PTGFRP43088 359 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 GLP1RP43220 463 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 KRTAP10-11P60412 298 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 ALKBH1Q13686 389 aaKnown RBP9.21□□□□□ -0.93
USP4-204ENST00000416417 DIAPH2-AS1Q14236 149 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 CDK5R1Q15078 307 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 ZSCAN26Q16670 478 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 HLA-DRB5Q30154 266 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 FDX2Q6P4F2 183 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 ZBTB49Q6ZSB9 765 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 OR10K1Q8NGX5 313 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 ZNF596Q8TC21 504 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 HRASLS5Q96KN8 279 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 RBM14Q96PK6 669 aaKnown RBP9.21□□□□□ -0.93
USP4-204ENST00000416417 COMMD4Q9H0A8 199 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 ZCCHC4Q9H5U6 513 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 LIN7BQ9HAP6 207 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 AMBNQ9NP70 447 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 TAS2R3Q9NYW6 316 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 MYRFQ9Y2G1 1151 aa9.21□□□□□ -0.93
USP4-204ENST00000416417 NOTCH3Q9UM47 2321 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 LY6LH3BQJ8 138 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 K7EIL1 84 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 DYNC1I1O14576 645 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 OR2F2O95006 317 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 ALPLP05186 524 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 LMO1P25800 156 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 HOXD3P31249 432 aaPredicted RBP9.21□□□□□ -0.94
USP4-204ENST00000416417 ZP1P60852 638 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 OR52W1Q6IF63 320 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 C18orf65Q6ZTR6 163 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 ZNF329Q86UD4 541 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 RTN4RL2Q86UN3 420 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 ACBD7Q8N6N7 88 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 WFDC9Q8NEX5 89 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 OR4D6Q8NGJ1 314 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 OR13A1Q8NGR1 328 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 RFESDQ8TAC1 157 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 RBMXL1Q96E39 390 aaKnown RBP9.21□□□□□ -0.94
USP4-204ENST00000416417 PDCD1LG2Q9BQ51 273 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 ALG8Q9BVK2 526 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 LINC00527Q9UJ94 153 aa9.21□□□□□ -0.94
USP4-204ENST00000416417 TSSC4Q9Y5U2 329 aaPredicted RBP9.21□□□□□ -0.94
USP4-204ENST00000416417 A0A1W2PPE3 182 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 WI2-2373I1.2A0A1W2PRP0 233 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 H0YJX3 145 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 CIB2O75838 187 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 MT-ND2P03891 347 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 SNRNP70P08621 437 aaKnown RBP9.2□□□□□ -0.94
USP4-204ENST00000416417 CD34P28906 385 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 GNG10P50151 68 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 CCR9P51686 369 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 SNRPGP62308 76 aaKnown RBP9.2□□□□□ -0.94
USP4-204ENST00000416417 HNF4GQ14541 408 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 KISS1Q15726 138 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 C16orf82Q7Z2V1 217 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 KCTD20Q7Z5Y7 419 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 SATL1Q86VE3 508 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 OR56B4Q8NH76 319 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 PLPPR1Q8TBJ4 325 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 KIRREL1Q96J84 757 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 AKR1E2Q96JD6 320 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 NOL4LQ96MY1 436 aaPredicted RBP9.2□□□□□ -0.94
USP4-204ENST00000416417 INPP5EQ9NRR6 644 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 KIF25Q9UIL4 384 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 EXOGQ9Y2C4 368 aaKnown RBP9.2□□□□□ -0.94
USP4-204ENST00000416417 PCDHGB5Q9Y5G0 923 aa9.2□□□□□ -0.94
USP4-204ENST00000416417 MEIKINA0A087WXM9 373 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 TRAV24A0A0B4J272 114 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 FUOMA2VDF0 154 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 E9PQ18 207 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 H3BNX3 289 aa9.19□□□□□ -0.94
USP4-204ENST00000416417 H3BUI4 141 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms