RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 MUC20Q8N307 709 aaPredicted RBP11.9□□□□□ -0.5
SF3B1-204ENST00000414963 C19orf18Q8NEA5 215 aa11.9□□□□□ -0.5
SF3B1-204ENST00000414963 NINJ1Q92982 152 aa11.9□□□□□ -0.5
SF3B1-204ENST00000414963 MED30Q96HR3 178 aa11.9□□□□□ -0.5
SF3B1-204ENST00000414963 SNX22Q96L94 193 aa11.9□□□□□ -0.5
SF3B1-204ENST00000414963 SDHCQ99643 169 aaPredicted RBP11.9□□□□□ -0.5
SF3B1-204ENST00000414963 SULT4A1Q9BR01 284 aa11.9□□□□□ -0.5
SF3B1-204ENST00000414963 TMEM246Q9BRR3 403 aa11.9□□□□□ -0.5
SF3B1-204ENST00000414963 SHARPINQ9H0F6 387 aa11.9□□□□□ -0.5
SF3B1-204ENST00000414963 FAM234AQ9H0X4 552 aa11.9□□□□□ -0.5
SF3B1-204ENST00000414963 ZNF665Q9H7R5 613 aa11.9□□□□□ -0.5
SF3B1-204ENST00000414963 ZMAT3Q9HA38 289 aaKnown RBP11.9□□□□□ -0.5
SF3B1-204ENST00000414963 MAB21L2Q9Y586 359 aa11.9□□□□□ -0.5
SF3B1-204ENST00000414963 APCP25054 2843 aa11.9□□□□□ -0.5
SF3B1-204ENST00000414963 ABCA12Q86UK0 2595 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 TMEM82A0PJX8 343 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 TMEM235A6NFC5 223 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 K7N7A8 449 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 SIRPB1O00241 398 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 SIGLEC5O15389 551 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 PPIHO43447 177 aaKnown RBP11.89□□□□□ -0.51
SF3B1-204ENST00000414963 PSPNO60542 156 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 GYPAP02724 150 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 CSN2P05814 226 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 CSF3P09919 207 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 DNASE1P24855 282 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 GABRA2P47869 451 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 CEBPDP49716 269 aaPredicted RBP11.89□□□□□ -0.51
SF3B1-204ENST00000414963 PDLIM4P50479 330 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 PYDC2Q56P42 97 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 PAN3Q58A45 887 aaKnown RBP11.89□□□□□ -0.51
SF3B1-204ENST00000414963 OLFML2AQ68BL7 652 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 C17orf107Q6ZR85 190 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 LRRC75A-AS1Q8N1F1 130 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 GAPTQ8N292 157 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 GPX8Q8TED1 209 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 SMIM4Q8WVI0 70 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 FCAMRQ8WWV6 532 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 GAFA1Q96PS6 74 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 CCDC32Q9BV29 185 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 RIMS4Q9H426 269 aaPredicted RBP11.89□□□□□ -0.51
SF3B1-204ENST00000414963 METRNQ9UJH8 293 aa11.89□□□□□ -0.51
SF3B1-204ENST00000414963 NDUFS8O00217 210 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 SSX4O60224 188 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 SSX5O60225 188 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 LPLP06858 475 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 OR3A1P47881 315 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 DSCR9P59020 149 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 IL13RA1P78552 427 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 MADCAM1Q13477 382 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 BRICD5Q6PL45 260 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 SLC36A1Q7Z2H8 476 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 Q8N402 240 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 ZNF525Q8N782 197 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 OR4S1Q8NGB4 309 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 OR5D13Q8NGL4 314 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 PPP1R35Q8TAP8 253 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 CCL13Q99616 98 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 OCSTAMPQ9BR26 566 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 NCOR1P1Q9H4R4 102 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 AK3Q9UIJ7 227 aa11.88□□□□□ -0.51
SF3B1-204ENST00000414963 ELF5Q9UKW6 265 aaPredicted RBP11.88□□□□□ -0.51
SF3B1-204ENST00000414963 RBMX2Q9Y388 322 aaKnown RBP11.88□□□□□ -0.51
SF3B1-204ENST00000414963 HECTD1Q9ULT8 2610 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 TRBV6-6A0A0A6YYG2 114 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 UBE2QL1A1L167 161 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 MEIOCA2RUB1 952 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 NKX6-3A6NJ46 265 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 H7C1Q1 480 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 MGST3O14880 152 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 NAPSAO96009 420 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 TFF1P04155 84 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 TK1P04183 234 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 CD3GP09693 182 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 PTHLHP12272 177 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 DTYMKP23919 212 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 CBX5P45973 191 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 GPR6P46095 362 aaPredicted RBP11.87□□□□□ -0.51
SF3B1-204ENST00000414963 GNG2P59768 71 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 SSBP1Q04837 148 aaKnown RBP11.87□□□□□ -0.51
SF3B1-204ENST00000414963 SRSF7Q16629 238 aaKnown RBP eCLIP11.87□□□□□ -0.51
SF3B1-204ENST00000414963 DEFB113Q30KQ7 82 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 SLC35E4Q6ICL7 350 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 ZNF497Q6ZNH5 498 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 OR8H2Q8N162 312 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 BPIFB2Q8N4F0 458 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 OR52I2Q8NH67 350 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 CYYR1Q96J86 154 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 THAP7Q9BT49 309 aaPredicted RBP11.87□□□□□ -0.51
SF3B1-204ENST00000414963 CHST6Q9GZX3 395 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 ETAA1Q9NY74 926 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 MTFP1Q9UDX5 166 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 MIOXQ9UGB7 285 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 ANAPC10Q9UM13 185 aa11.87□□□□□ -0.51
SF3B1-204ENST00000414963 NAV2Q8IVL1 2488 aa11.86□□□□□ -0.51
SF3B1-204ENST00000414963 VWC2LB2RUY7 222 aa11.86□□□□□ -0.51
SF3B1-204ENST00000414963 J3QRK9 145 aa11.86□□□□□ -0.51
SF3B1-204ENST00000414963 TMPRSS2O15393 492 aa11.86□□□□□ -0.51
SF3B1-204ENST00000414963 ADAM20O43506 726 aa11.86□□□□□ -0.51
SF3B1-204ENST00000414963 MT-ND4P03905 459 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms