RNA–Protein interactions for RNA: ENST00000396581.5

TRIM40-207, Transcript of tripartite motif containing 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM40, Length 2,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-207ENST00000396581 TREM2Q9NZC2 230 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 PUS1Q9Y606 427 aaKnown RBP eCLIP11.51□□□□□ -0.57
TRIM40-207ENST00000396581 TMEM56-RWDD3S4R434 201 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 RALGAPA1Q6GYQ0 2036 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 IGKV1-12A0A0C4DH73 117 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 IGSF23A1L1A6 192 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 CLEC18AA5D8T8 446 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 H3BQ15 152 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 ZNF205O95201 554 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 SLC34A2O95436 690 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 IGKV1D-12P01611 117 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 CYC1P08574 325 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 CEACAM1P13688 526 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 RBP2P50120 134 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 MRPS34P82930 218 aaKnown RBP11.51□□□□□ -0.57
TRIM40-207ENST00000396581 KIAA0141Q14154 515 aaPredicted RBP11.51□□□□□ -0.57
TRIM40-207ENST00000396581 ELOBQ15370 118 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 TMEM211Q6ICI0 200 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 ZNF100Q8IYN0 542 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 CLEC18CQ8NCF0 446 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 OR2G3Q8NGZ4 309 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 AKR7LQ8NHP1 331 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 RAB39BQ96DA2 213 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 PLEKHF2Q9H8W4 249 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 SIRT7Q9NRC8 400 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 LYRM2Q9NU23 88 aaPredicted RBP11.51□□□□□ -0.57
TRIM40-207ENST00000396581 PLEK2Q9NYT0 353 aa11.51□□□□□ -0.57
TRIM40-207ENST00000396581 C3orf85A0A1B0GTC6 90 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 FAM24AA6NFZ4 105 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 ZNF724A8MTY0 619 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 RPL36A-HNRNPH2H7BZ11 118 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 GEMIN2O14893 280 aaKnown RBP11.5□□□□□ -0.57
TRIM40-207ENST00000396581 GPR37O15354 613 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 SYNGR3O43761 229 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 HSPB1P04792 205 aaKnown RBP11.5□□□□□ -0.57
TRIM40-207ENST00000396581 CCL4P13236 92 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 CD59P13987 128 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 RND3P61587 244 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 RAB35Q15286 201 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 PYY3Q5JQD4 70 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 OR2B11Q5JQS5 317 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 ZNF506Q5JVG8 444 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 OSR2Q8N2R0 312 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 TMEM171Q8WVE6 324 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 TMEM222Q9H0R3 208 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 WDR54Q9H977 334 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 AKIRIN1Q9H9L7 192 aaPredicted RBP11.5□□□□□ -0.57
TRIM40-207ENST00000396581 ZNF318Q5VUA4 2279 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 MED19A0JLT2 244 aaPredicted RBP11.5□□□□□ -0.57
TRIM40-207ENST00000396581 MPPED1O15442 326 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 MMP9P14780 707 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 AADACP22760 399 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 CHAF1BQ13112 559 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 HAGHQ16775 308 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 RSPO4Q2I0M5 234 aaPredicted RBP11.5□□□□□ -0.57
TRIM40-207ENST00000396581 DNLZQ5SXM8 178 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 Q6ZS49 121 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 ODF3L1Q8IXM7 274 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 TMEM252Q8N6L7 170 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 ZIC4Q8N9L1 334 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 DYRK2Q92630 601 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 ABHD14AQ9BUJ0 271 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 SLC25A31Q9H0C2 315 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 PARPBPQ9NWS1 579 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 DOK5Q9P104 306 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 KNTC1P50748 2209 aa11.5□□□□□ -0.57
TRIM40-207ENST00000396581 TRBV23-1A0A0A0MS06 115 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 DUXBA0A1W2PPF3 345 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 FAM230AA0A1W2PPH8 454 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 NKX2-6A6NCS4 301 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 B4E171 279 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 PDCD6O75340 191 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 SCAF4O95104 1147 aaKnown RBP11.49□□□□□ -0.57
TRIM40-207ENST00000396581 PPYP01298 95 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 TSPAN7P41732 249 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 NKX2-1P43699 371 aaPredicted RBP11.49□□□□□ -0.57
TRIM40-207ENST00000396581 RPS10P46783 165 aaKnown RBP11.49□□□□□ -0.57
TRIM40-207ENST00000396581 NUBP1P53384 320 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 ICAM4Q14773 271 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 DAZAP2Q15038 168 aaPredicted RBP11.49□□□□□ -0.57
TRIM40-207ENST00000396581 SRSF7Q16629 238 aaKnown RBP eCLIP11.49□□□□□ -0.57
TRIM40-207ENST00000396581 PIGYQ3MUY2 71 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 ZNF600Q6ZNG1 722 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 C20orf196Q8IYI0 205 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 OR10G4Q8NGN3 311 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 OR13D1Q8NGV5 346 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 Q8WTZ3 238 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 BORCS8Q96FH0 119 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 RBM24Q9BX46 236 aaKnown RBP11.49□□□□□ -0.57
TRIM40-207ENST00000396581 OPA3Q9H6K4 179 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 ZNF391Q9UJN7 358 aa11.49□□□□□ -0.57
TRIM40-207ENST00000396581 PROB1E7EW31 1015 aa11.48□□□□□ -0.57
TRIM40-207ENST00000396581 HSPA12AO43301 675 aa11.48□□□□□ -0.57
TRIM40-207ENST00000396581 YIF1AO95070 293 aa11.48□□□□□ -0.57
TRIM40-207ENST00000396581 KLK3P07288 261 aaPredicted RBP11.48□□□□□ -0.57
TRIM40-207ENST00000396581 GLI4P10075 376 aa11.48□□□□□ -0.57
TRIM40-207ENST00000396581 BAXQ07812 192 aa11.48□□□□□ -0.57
TRIM40-207ENST00000396581 DPPA3Q6W0C5 159 aa11.48□□□□□ -0.57
TRIM40-207ENST00000396581 SLC35E3Q7Z769 313 aa11.48□□□□□ -0.57
TRIM40-207ENST00000396581 ZNF610Q8N9Z0 462 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms