RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 MMP16P51512 607 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 ANKRD55Q3KP44 614 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 LYG1Q8N1E2 194 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 SPPL3Q8TCT6 385 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 KCNE4Q8WWG9 221 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 CDCA3Q99618 268 aaPredicted RBP10.51□□□□□ -0.73
SYNPO-202ENST00000394243 FRRS1LQ9P0K9 344 aa10.51□□□□□ -0.73
SYNPO-202ENST00000394243 LOC105371267A0A1B0GV96 52 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 PTP4A3O75365 173 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 SLC35B1P78383 322 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 LINC00469Q8N7U9 141 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 ANXA10Q9UJ72 324 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 VSIG4Q9Y279 399 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 IGSF23A1L1A6 192 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 MPZL1O95297 269 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 ERVFRD-1P60508 538 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 MYEOVQ96EZ4 313 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 IGHV3-43A0A0B4J1X8 118 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 IGHV3-43DP0DP04 118 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 SRP14P37108 136 aaKnown RBP10.5□□□□□ -0.73
SYNPO-202ENST00000394243 CDX1P47902 265 aaPredicted RBP10.5□□□□□ -0.73
SYNPO-202ENST00000394243 KMT5CQ86Y97 462 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 LRRC3BQ96PB8 259 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 COL25A1Q9BXS0 654 aaPredicted RBP10.5□□□□□ -0.73
SYNPO-202ENST00000394243 TLNRD1Q9H1K6 362 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 RNF186Q9NXI6 227 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF716A6NP11 495 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 M0R3E3 92 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 ADAMTS17Q8TE56 1095 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 TIMD4Q96H15 378 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 PCGF1Q9BSM1 259 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 MRPL13Q9BYD1 178 aaKnown RBP10.5□□□□□ -0.73
SYNPO-202ENST00000394243 A0A1B0GV72 72 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 IGLV3-25P01717 112 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 CA6P23280 308 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 ADPRHP54922 357 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 ARL6IP6Q8N6S5 226 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 CCL4L1Q8NHW4 92 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 HS3ST3A1Q9Y663 406 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 NKX2-6A6NCS4 301 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 TMIGD3P0DMS9 266 aaPredicted RBP10.5□□□□□ -0.73
SYNPO-202ENST00000394243 AREGP15514 252 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 MDH2P40926 338 aaKnown RBP10.5□□□□□ -0.73
SYNPO-202ENST00000394243 MOGAT1Q96PD6 335 aa10.5□□□□□ -0.73
SYNPO-202ENST00000394243 CYR61O00622 381 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 RPL34P49207 117 aaKnown RBP10.49□□□□□ -0.73
SYNPO-202ENST00000394243 LYZP61626 148 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 OR10AC1Q8NH08 325 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF296Q8WUU4 475 aaPredicted RBP10.49□□□□□ -0.73
SYNPO-202ENST00000394243 WBP2Q969T9 261 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 TMEM204Q9BSN7 226 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 GPR27Q9NS67 375 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 KLK2P20151 261 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 MYBPHQ13203 477 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 MTURNQ8N3F0 131 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 STARD10Q9Y365 291 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 H7C2G1 150 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 KLF7O75840 302 aaPredicted RBP10.49□□□□□ -0.73
SYNPO-202ENST00000394243 IRF3Q14653 427 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 MICBQ29980 383 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 VASH2Q86V25 355 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 ALG14Q96F25 216 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 FOXB1Q99853 325 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 SMDT1Q9H4I9 107 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 GSN-AS1Q9NRJ2 163 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 MRPS2Q9Y399 296 aaKnown RBP10.49□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF205O95201 554 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 CRYABP02511 175 aaKnown RBP10.49□□□□□ -0.73
SYNPO-202ENST00000394243 VSIG10L2P0DP72 767 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 B4GALNT1Q00973 533 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 PLPPR5Q32ZL2 321 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 Q8IYB0 196 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 GAL3ST2Q9H3Q3 398 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 ZNF391Q9UJN7 358 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 GNB2P62879 340 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 MRPL58Q14197 206 aaKnown RBP10.49□□□□□ -0.73
SYNPO-202ENST00000394243 COL19A1Q14993 1142 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 RABEPKQ7Z6M1 372 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 GHITMQ9H3K2 345 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 DNAJB12Q9NXW2 375 aaKnown RBP10.49□□□□□ -0.73
SYNPO-202ENST00000394243 CES1P1Q9UKY3 287 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 C5P01031 1676 aa10.49□□□□□ -0.73
SYNPO-202ENST00000394243 LBX1P52954 281 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 NAAAQ02083 359 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 DEGS2Q6QHC5 323 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 KNL1Q8NG31 2342 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 WDR25Q64LD2 544 aaPredicted RBP10.48□□□□□ -0.73
SYNPO-202ENST00000394243 SCN11AQ9UI33 1791 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 IGHV3-13P01766 116 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 IGHV3-7P01780 117 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 VDAC1P21796 283 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 IGFBP6P24592 240 aaPredicted RBP10.48□□□□□ -0.73
SYNPO-202ENST00000394243 IL36GQ9NZH8 169 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 CXorf1O96002 111 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 HMGA1P17096 107 aaKnown RBP10.48□□□□□ -0.73
SYNPO-202ENST00000394243 EMP1P54849 157 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 DNLZQ5SXM8 178 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 TMEM91Q6ZNR0 172 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 GAPTQ8N292 157 aa10.48□□□□□ -0.73
SYNPO-202ENST00000394243 AMER3Q8N944 861 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms