RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 MGST3O14880 152 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 GEMIN2O14893 280 aaKnown RBP10.95□□□□□ -0.66
VPS28-202ENST00000377348 IGHV1-69P01742 117 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 PSMA1P25786 263 aaKnown RBP10.95□□□□□ -0.66
VPS28-202ENST00000377348 RBM11P57052 281 aaKnown RBP10.95□□□□□ -0.66
VPS28-202ENST00000377348 AESQ08117 197 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 BLMHQ13867 455 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 IL13RA2Q14627 380 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 ATXN7L3Q14CW9 347 aaPredicted RBP10.95□□□□□ -0.66
VPS28-202ENST00000377348 TUSC1Q2TAM9 212 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 KCTD21Q4G0X4 260 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 C9orf139Q6ZV77 190 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 CDH26Q8IXH8 852 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 PPP1R35Q8TAP8 253 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 C1orf147Q96MC9 270 aaPredicted RBP10.95□□□□□ -0.66
VPS28-202ENST00000377348 GFI1Q99684 422 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 SUCNR1Q9BXA5 334 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 BANF2Q9H503 90 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 METTL8Q9H825 291 aaKnown RBP10.95□□□□□ -0.66
VPS28-202ENST00000377348 ESM1Q9NQ30 184 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 NDUFB11Q9NX14 153 aa10.95□□□□□ -0.66
VPS28-202ENST00000377348 MEGF11A6BM72 1044 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 PRTN3P24158 256 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 CALRP27797 417 aaKnown RBP10.94□□□□□ -0.66
VPS28-202ENST00000377348 GLIPR1P48060 266 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 DLX6P56179 175 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 P2RX3P56373 397 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 HILS1P60008 231 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 TAF9Q16594 264 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 DEFB112Q30KQ8 113 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 KRTAP24-1Q3LI83 254 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 PAN3Q58A45 887 aaKnown RBP10.94□□□□□ -0.66
VPS28-202ENST00000377348 GLT8D1Q68CQ7 371 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 HCP5Q6MZN7 132 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 ZNF782Q6ZMW2 699 aaPredicted RBP10.94□□□□□ -0.66
VPS28-202ENST00000377348 C1orf122Q6ZSJ8 110 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 PIP4P2Q8N4L2 257 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 CHST4Q8NCG5 386 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 TMEM104Q8NE00 496 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 TBC1D15Q8TC07 691 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 COQ2Q96H96 371 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 DUX5Q96PT3 197 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 UQCC2Q9BRT2 126 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 SLITRK2Q9H156 845 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 KCNK15Q9H427 330 aa10.94□□□□□ -0.66
VPS28-202ENST00000377348 AK6Q9Y3D8 172 aaKnown RBP10.94□□□□□ -0.66
VPS28-202ENST00000377348 A0A1W2PPH5 198 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 hADV38S2A0JD32 116 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 CCRL2O00421 344 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 ZNF780AO75290 641 aaPredicted RBP10.93□□□□□ -0.66
VPS28-202ENST00000377348 CRTAPO75718 401 aaPredicted RBP10.93□□□□□ -0.66
VPS28-202ENST00000377348 ARL6IP5O75915 188 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 OR7C1O76099 320 aaPredicted RBP10.93□□□□□ -0.66
VPS28-202ENST00000377348 ZNF728P0DKX0 622 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 GTF2F2P13984 249 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 ERP29P30040 261 aaKnown RBP10.93□□□□□ -0.66
VPS28-202ENST00000377348 MEF2CQ06413 473 aaPredicted RBP10.93□□□□□ -0.66
VPS28-202ENST00000377348 NEDD8Q15843 81 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 NHLRC3Q5JS37 347 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 KRBOX4Q5JUW0 171 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 OR10K2Q6IF99 312 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 BRICD5Q6PL45 260 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 USP43Q70EL4 1123 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 TRAPPC6BQ86SZ2 158 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 ZDHHC22Q8N966 263 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 SUMF2Q8NBJ7 301 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 FCGR1BQ92637 280 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 FAM46BQ96A09 425 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 CYYR1Q96J86 154 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 LINC00312Q9Y6C7 94 aa10.93□□□□□ -0.66
VPS28-202ENST00000377348 A0A0A6YYJ9 748 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 A0A0U1RQK1 487 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 SHISA3A0PJX4 238 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 RNF212BA8MTL3 300 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 C17orf98A8MV24 154 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 CSN2P05814 226 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 MGMTP16455 207 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 COX7A1P24310 79 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 BPIFB3P59826 476 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 BAMBIQ13145 260 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 GPR176Q14439 515 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 C1orf100Q5SVJ3 147 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 ATAD3CQ5T2N8 411 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 C22orf42Q6IC83 251 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 CD200R1LQ6Q8B3 271 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 RBMS3Q6XE24 437 aaKnown RBP10.92□□□□□ -0.66
VPS28-202ENST00000377348 PLPPR1Q8TBJ4 325 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 FOXRED1Q96CU9 486 aaPredicted RBP10.92□□□□□ -0.66
VPS28-202ENST00000377348 ZNF714Q96N38 554 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 DPCDQ9BVM2 203 aaPredicted RBP10.92□□□□□ -0.66
VPS28-202ENST00000377348 SELENOIQ9C0D9 397 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 UNKLQ9H9P5 680 aaKnown RBP10.92□□□□□ -0.66
VPS28-202ENST00000377348 PCDHB16Q9NRJ7 776 aa10.92□□□□□ -0.66
VPS28-202ENST00000377348 TRDV1A0A1B0GX56 115 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 ODAMA1E959 279 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 DNAJC9-AS1A6NH13 148 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 NPFFO15130 113 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 SLC22A1O15245 554 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 MMP23AO75900 390 aa10.91□□□□□ -0.66
VPS28-202ENST00000377348 MPIG6BO95866 241 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms