RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 RAB2AP61019 212 aa12.21□□□□□ -0.46
CLCNKA-202ENST00000375692 HIST2H3AQ71DI3 136 aa12.21□□□□□ -0.46
CLCNKA-202ENST00000375692 TMEM54Q969K7 222 aa12.21□□□□□ -0.46
CLCNKA-202ENST00000375692 SPTSSAQ969W0 71 aa12.21□□□□□ -0.46
CLCNKA-202ENST00000375692 SPACA9Q96E40 222 aaPredicted RBP12.21□□□□□ -0.46
CLCNKA-202ENST00000375692 ANGPTL4Q9BY76 406 aa12.21□□□□□ -0.46
CLCNKA-202ENST00000375692 LIPGQ9Y5X9 500 aa12.21□□□□□ -0.46
CLCNKA-202ENST00000375692 LOC102725191A0A1B0GVB3 256 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 CELA2AP08217 269 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 MAS1LP35410 378 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 HIST1H3AP68431 136 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 H3F3AP84243 136 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 CXorf66Q5JRM2 361 aaPredicted RBP12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 C10orf128Q5T292 105 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 HIST2H3PS2Q5TEC6 136 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 ZNF774Q6NX45 483 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 C1QL4Q86Z23 238 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 CARFQ8N187 725 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 SYT3Q9BQG1 590 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 DEFB126Q9BYW3 111 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 ST3GAL6Q9Y274 331 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 NPIPA2E9PIF3 369 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 NPIPA3F8WFD2 350 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 HSD17B6O14756 317 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 CST7O76096 145 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 ZNF674Q2M3X9 581 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 DBX2Q6ZNG2 339 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 Q6ZSR3 168 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 KMT5CQ86Y97 462 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 TMEM217Q8N7C4 229 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 FADS6Q8N9I5 356 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 Q8WTZ3 238 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 MOB3AQ96BX8 217 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 NTNG2Q96CW9 530 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 P4HTMQ9NXG6 502 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 DOK5Q9P104 306 aa12.2□□□□□ -0.46
CLCNKA-202ENST00000375692 SSSCA1O60232 199 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 SCRG1O75711 98 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 LCATP04180 440 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 CCL4P13236 92 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 RBP2P50120 134 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 UBE2KP61086 200 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 RUNX1Q01196 453 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 HIKESHIQ53FT3 197 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 TMEM123Q8N131 208 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 LFNGQ8NES3 379 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 SPSB1Q96BD6 273 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 BORCS8Q96FH0 119 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 LOXL4Q96JB6 756 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 ULBP2Q9BZM5 246 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 SLC7A11Q9UPY5 501 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 CHCHD2Q9Y6H1 151 aaPredicted RBP12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 C3orf85A0A1B0GTC6 90 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 A0A1B0GW64 132 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 PROB1E7EW31 1015 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 NTN3O00634 580 aaPredicted RBP12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 TOX3O15405 576 aaPredicted RBP12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 SRP19P09132 144 aaKnown RBP12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 CD59P13987 128 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 EPHA1P21709 976 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 HERV-K104P61576 105 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 SPNS3Q6ZMD2 512 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 OSR2Q8N2R0 312 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 ZIC4Q8N9L1 334 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 C11orf1Q9H5F2 150 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 ZNF286AQ9HBT8 521 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 GLRX2Q9NS18 164 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 TMED3Q9Y3Q3 217 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 KMT2EQ8IZD2 1858 aa12.19□□□□□ -0.46
CLCNKA-202ENST00000375692 MUC6Q6W4X9 2439 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 TGIF2-C20orf24A0A0A6YYL0 155 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 MPPED1O15442 326 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 LY86O95711 162 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 ERVFRD-1P60508 538 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 DLK1P80370 383 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 ELOBQ15370 118 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 PDZD11Q5EBL8 140 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 RAET1LQ5VY80 246 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 P4HA3Q7Z4N8 544 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 ZNF429Q86V71 674 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 CYB561D1Q8N8Q1 229 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 OR5C1Q8NGR4 320 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 OR14L1PQ8NHC6 308 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 C10orf35Q96D05 121 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 FAM86C1Q9NVL1 165 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 HS3ST3B1Q9Y662 390 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 TERTO14746 1132 aaKnown RBP12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 DKK1O94907 266 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 TMEM50AO95807 157 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 NKX2-1P43699 371 aaPredicted RBP12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 CDX1P47902 265 aaPredicted RBP12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 GFI1BQ5VTD9 330 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 ZNF600Q6ZNG1 722 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 FOXL2NBQ6ZUU3 175 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 ZNF383Q8NA42 475 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 PFDN5Q99471 154 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 BCO1Q9HAY6 547 aa12.18□□□□□ -0.46
CLCNKA-202ENST00000375692 ADAMTS20P59510 1910 aa12.17□□□□□ -0.46
CLCNKA-202ENST00000375692 NRASP01111 189 aa12.17□□□□□ -0.46
CLCNKA-202ENST00000375692 PPYP01298 95 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms