RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 TMED4Q7Z7H5 227 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 ZDHHC22Q8N966 263 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 NUDCD2Q8WVJ2 157 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 PP6455Q8WZ26 134 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 FBXO17Q96EF6 278 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 SAT2Q96F10 170 aaPredicted RBP12.3□□□□□ -0.44
HMGA1-203ENST00000374116 URM1Q9BTM9 101 aaKnown RBP12.3□□□□□ -0.44
HMGA1-203ENST00000374116 TMEM59Q9BXS4 323 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 UFSP2Q9NUQ7 469 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 PROCRQ9UNN8 238 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 POMT1Q9Y6A1 747 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 DOPEY2Q9Y3R5 2298 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 SPTAN1Q13813 2472 aaKnown RBP12.3□□□□□ -0.44
HMGA1-203ENST00000374116 TRBV23-1A0A0A0MS06 115 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 TEX13DA0A0J9YY54 714 aaPredicted RBP12.3□□□□□ -0.44
HMGA1-203ENST00000374116 C9orf170A2RU37 121 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 OR2AT4A6NND4 320 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 ZNF724A8MTY0 619 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 M0R135 149 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 MRPL33O75394 65 aaKnown RBP12.3□□□□□ -0.44
HMGA1-203ENST00000374116 CST2P09228 141 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 OR8U8P0C7N1 319 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 ALDH3B1P43353 468 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 SRSF3P84103 164 aaKnown RBP12.3□□□□□ -0.44
HMGA1-203ENST00000374116 FABP9Q0Z7S8 132 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 AAED1Q7RTV5 226 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 RNF144BQ7Z419 303 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 ZNF100Q8IYN0 542 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 GPR137CQ8N3F9 429 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 TMEM104Q8NE00 496 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 OR56B1Q8NGI3 324 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 TMEM45BQ96B21 275 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 RAB3CQ96E17 227 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 ZNF799Q96GE5 643 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 NICN1Q9BSH3 213 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 TREM1Q9NP99 234 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 GLRX2Q9NS18 164 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 PLEK2Q9NYT0 353 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 A0A0A6YYD4 124 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 C5orf63A6NC05 138 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 DBX1A6NMT0 343 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 F5H0A9 414 aaPredicted RBP12.29□□□□□ -0.44
HMGA1-203ENST00000374116 PPIHO43447 177 aaKnown RBP12.29□□□□□ -0.44
HMGA1-203ENST00000374116 NFYBP25208 207 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 HTR5AP47898 357 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 CAV2P51636 162 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 AKR1C2P52895 323 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 AKR1C1Q04828 323 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 RAB35Q15286 201 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 HMGN3Q15651 99 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 KISS1Q15726 138 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 TSPO2Q5TGU0 170 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 SLC25A42Q86VD7 318 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 ZNF808Q8N4W9 903 aaPredicted RBP12.29□□□□□ -0.44
HMGA1-203ENST00000374116 GVQW1Q8N7I0 195 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 CST11Q9H112 138 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 OR10A2Q9H208 303 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 PLSCR4Q9NRQ2 329 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 TMEM38BQ9NVV0 291 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 ZNF230Q9UIE0 474 aaPredicted RBP12.29□□□□□ -0.44
HMGA1-203ENST00000374116 ANAPC10Q9UM13 185 aa12.29□□□□□ -0.44
HMGA1-203ENST00000374116 SETXQ7Z333 2677 aaKnown RBP12.29□□□□□ -0.44
HMGA1-203ENST00000374116 DOPEY1Q5JWR5 2465 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 ICE1Q9Y2F5 2266 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 CLEC18AA5D8T8 446 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 C19orf84I3L1E1 186 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 MFNGO00587 321 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 CRTAPO75718 401 aaPredicted RBP12.28□□□□□ -0.44
HMGA1-203ENST00000374116 CLDN14O95500 239 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 CSN2P05814 226 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 FAM157CP0CG43 387 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 HIST1H1DP16402 221 aaKnown RBP12.28□□□□□ -0.44
HMGA1-203ENST00000374116 CRYGSP22914 178 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 CD34P28906 385 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 HRH1P35367 487 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 HGFACQ04756 655 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 FAM27E3Q08E93 113 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 KRTAP27-1Q3LI81 207 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 OR52W1Q6IF63 320 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 FAHD2BQ6P2I3 314 aaPredicted RBP12.28□□□□□ -0.44
HMGA1-203ENST00000374116 CLEC18BQ6UXF7 455 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 BAP18Q8IXM2 172 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 CLEC18CQ8NCF0 446 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 APH1AQ96BI3 265 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 FAHD2AQ96GK7 314 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 ALKBH3Q96Q83 286 aaPredicted RBP12.28□□□□□ -0.44
HMGA1-203ENST00000374116 OCSTAMPQ9BR26 566 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 CHST5Q9GZS9 411 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 CRLF2Q9HC73 371 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 SLC7A10Q9NS82 523 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 PPP1R14DQ9NXH3 145 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 VSIG4Q9Y279 399 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 TIMM10BQ9Y5J6 103 aa12.28□□□□□ -0.44
HMGA1-203ENST00000374116 DHRS7CA6NNS2 312 aa12.27□□□□□ -0.44
HMGA1-203ENST00000374116 A8MXE2 369 aa12.27□□□□□ -0.44
HMGA1-203ENST00000374116 AP4M1O00189 453 aa12.27□□□□□ -0.44
HMGA1-203ENST00000374116 SOCS1O15524 211 aa12.27□□□□□ -0.44
HMGA1-203ENST00000374116 CLDN1O95832 211 aa12.27□□□□□ -0.44
HMGA1-203ENST00000374116 F12P00748 615 aaPredicted RBP12.27□□□□□ -0.44
HMGA1-203ENST00000374116 IFNA6P05013 189 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms