RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 FKBP2P26885 142 aaKnown RBP14.14□□□□□ -0.15
SDC4-201ENST00000372733 DAZAP2Q15038 168 aaPredicted RBP14.14□□□□□ -0.15
SDC4-201ENST00000372733 ALKBH3Q96Q83 286 aaPredicted RBP14.14□□□□□ -0.15
SDC4-201ENST00000372733 DOK5Q9P104 306 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 KIAA1456Q9P272 454 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 UBE2J1Q9Y385 318 aaPredicted RBP14.14□□□□□ -0.15
SDC4-201ENST00000372733 PROB1E7EW31 1015 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 ZNF32P17041 273 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 TCN2P20062 427 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 DYNLT3P51808 116 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 RBM11P57052 281 aaKnown RBP14.14□□□□□ -0.15
SDC4-201ENST00000372733 ERVFRD-1P60508 538 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 DLK1P80370 383 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 ICAM4Q14773 271 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 SPIN3Q5JUX0 258 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 PLCXD3Q63HM9 321 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 GUSBP11Q6P575 273 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 TBC1D26Q86UD7 250 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 ODF3L1Q8IXM7 274 aa14.14□□□□□ -0.15
SDC4-201ENST00000372733 C19orf25Q9UFG5 118 aaPredicted RBP14.14□□□□□ -0.15
SDC4-201ENST00000372733 NDUFS6O75380 124 aaKnown RBP14.13□□□□□ -0.15
SDC4-201ENST00000372733 VAMP5O95183 116 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 TMEM50AO95807 157 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 GNRHRP30968 328 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 RGS19P49795 217 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 ELOBQ15370 118 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 TMEM42Q69YG0 159 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 ZNF429Q86V71 674 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 ZNF695Q8IW36 515 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 SMDT1Q9H4I9 107 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 PLEKHF2Q9H8W4 249 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 CRLF2Q9HC73 371 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 SLC7A10Q9NS82 523 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 LYRM2Q9NU23 88 aaPredicted RBP14.13□□□□□ -0.15
SDC4-201ENST00000372733 WNT16Q9UBV4 365 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 DKKL1Q9UK85 242 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 HS3ST3B1Q9Y662 390 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 A0A087WZY1 265 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 TGIF2-C20orf24A0A0A6YYL0 155 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 ZIC3O60481 467 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 SCAF4O95104 1147 aaKnown RBP14.13□□□□□ -0.15
SDC4-201ENST00000372733 LIFP15018 202 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 NTF4P34130 210 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 CDX1P47902 265 aaPredicted RBP14.13□□□□□ -0.15
SDC4-201ENST00000372733 VAMP2P63027 116 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 ZNF92Q03936 586 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 SPNS3Q6ZMD2 512 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 P4HA3Q7Z4N8 544 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 DPPA2Q7Z7J5 298 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 CALHM1Q8IU99 346 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 NAT6Q93015 286 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 DMRT1Q9Y5R6 373 aa14.13□□□□□ -0.15
SDC4-201ENST00000372733 GDF9O60383 454 aa14.12□□□□□ -0.15
SDC4-201ENST00000372733 NPBWR2P48146 333 aa14.12□□□□□ -0.15
SDC4-201ENST00000372733 ZNF468Q5VIY5 522 aaPredicted RBP14.12□□□□□ -0.15
SDC4-201ENST00000372733 ZNF100Q8IYN0 542 aa14.12□□□□□ -0.15
SDC4-201ENST00000372733 GPR137CQ8N3F9 429 aa14.12□□□□□ -0.15
SDC4-201ENST00000372733 ZNF610Q8N9Z0 462 aa14.12□□□□□ -0.15
SDC4-201ENST00000372733 PIGCQ92535 297 aa14.12□□□□□ -0.15
SDC4-201ENST00000372733 A0A1W2PQM1 296 aa14.12□□□□□ -0.15
SDC4-201ENST00000372733 SRPXP78539 464 aa14.12□□□□□ -0.15
SDC4-201ENST00000372733 PCOLCEQ15113 449 aa14.12□□□□□ -0.15
SDC4-201ENST00000372733 SELENOHQ8IZQ5 122 aaKnown RBP14.12□□□□□ -0.15
SDC4-201ENST00000372733 UNKLQ9H9P5 680 aaKnown RBP14.12□□□□□ -0.15
SDC4-201ENST00000372733 PROK2Q9HC23 129 aa14.12□□□□□ -0.15
SDC4-201ENST00000372733 WSB1Q9Y6I7 421 aa14.12□□□□□ -0.15
SDC4-201ENST00000372733 hCG_38984A0A1B0GV85 526 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 BCAT2O15382 392 aaPredicted RBP14.11□□□□□ -0.15
SDC4-201ENST00000372733 S100A2P29034 98 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 ZNF154Q13106 437 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 ZNF818PQ6ZRF7 136 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 OR8G5Q8NG78 346 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 FGFBP3Q8TAT2 258 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 TMEM38BQ9NVV0 291 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 OR6C6A6NF89 314 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 HSPA12AO43301 675 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 FUT3P21217 361 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 OR8B8Q15620 311 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 EXT1Q16394 746 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 PDZD11Q5EBL8 140 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 TMEM211Q6ICI0 200 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 SLC25A26Q70HW3 274 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 ZNF611Q8N823 705 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 TMEM56Q96MV1 263 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 PFDN5Q99471 154 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 SPIN2AQ99865 258 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 SPIN2BQ9BPZ2 258 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 SLC25A31Q9H0C2 315 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 IL36GQ9NZH8 169 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 TMEM56-RWDD3S4R434 201 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 IGKV1D-13A0A0B4J2D9 117 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 IGHV5-10-1A0A0J9YXX1 117 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 BTBD17A6NE02 478 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 WRBO00258 174 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 TOX3O15405 576 aaPredicted RBP14.11□□□□□ -0.15
SDC4-201ENST00000372733 HIST1H2BKO60814 126 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 SLC34A2O95436 690 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 HIST1H2BJP06899 126 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 IGKV1-13P0DP09 117 aa14.11□□□□□ -0.15
SDC4-201ENST00000372733 HIST1H2BOP23527 126 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms