RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 APOL4Q9BPW4 351 aa10.9□□□□□ -0.66
VPS29-201ENST00000360579 DCLRE1BQ9H816 532 aa10.9□□□□□ -0.66
VPS29-201ENST00000360579 SLC25A19Q9HC21 320 aa10.9□□□□□ -0.66
VPS29-201ENST00000360579 EXOSC4Q9NPD3 245 aaKnown RBP10.9□□□□□ -0.66
VPS29-201ENST00000360579 LINC00527Q9UJ94 153 aa10.9□□□□□ -0.66
VPS29-201ENST00000360579 ODAMA1E959 279 aa10.89□□□□□ -0.67
VPS29-201ENST00000360579 AP4M1O00189 453 aa10.89□□□□□ -0.67
VPS29-201ENST00000360579 SIRPB1O00241 398 aa10.89□□□□□ -0.67
VPS29-201ENST00000360579 GNGT2O14610 69 aa10.89□□□□□ -0.67
VPS29-201ENST00000360579 CSN2P05814 226 aa10.89□□□□□ -0.67
VPS29-201ENST00000360579 CDX1P47902 265 aaPredicted RBP10.89□□□□□ -0.67
VPS29-201ENST00000360579 NPBWR2P48146 333 aa10.89□□□□□ -0.67
VPS29-201ENST00000360579 PNLIPRP3Q17RR3 467 aa10.89□□□□□ -0.67
VPS29-201ENST00000360579 CXorf66Q5JRM2 361 aaPredicted RBP10.89□□□□□ -0.67
VPS29-201ENST00000360579 ARHGAP24Q8N264 748 aa10.89□□□□□ -0.67
VPS29-201ENST00000360579 DRAM1Q8N682 238 aa10.89□□□□□ -0.67
VPS29-201ENST00000360579 PP6455Q8WZ26 134 aa10.89□□□□□ -0.67
VPS29-201ENST00000360579 ADI1Q9BV57 179 aa10.89□□□□□ -0.67
VPS29-201ENST00000360579 KRT84Q9NSB2 600 aa10.89□□□□□ -0.67
VPS29-201ENST00000360579 TVP23BQ9NYZ1 205 aa10.89□□□□□ -0.67
VPS29-201ENST00000360579 SCOCQ9UIL1 159 aa10.89□□□□□ -0.67
VPS29-201ENST00000360579 ZNF729A6NN14 1252 aaPredicted RBP10.88□□□□□ -0.67
VPS29-201ENST00000360579 ZNF670-ZNF695F2Z2N8 137 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 OR2H2O95918 312 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 BCL3P20749 454 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 GDNFP39905 211 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 GLIPR1P48060 266 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 RAB7AP51149 207 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 INSL3P51460 131 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 AESQ08117 197 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 MADCAM1Q13477 382 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 PLEKHG7Q6ZR37 379 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 LCNL1Q6ZST4 164 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 SLC35F2Q8IXU6 374 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 OR8H3Q8N146 312 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 PRRG3Q9BZD7 231 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 HMG20AQ9NP66 347 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 OR6C3Q9NZP0 311 aa10.88□□□□□ -0.67
VPS29-201ENST00000360579 MRM2Q9UI43 246 aaKnown RBP10.88□□□□□ -0.67
VPS29-201ENST00000360579 STARD9Q9P2P6 4700 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 LY86O95711 162 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 RPLP1P05386 114 aaKnown RBP10.87□□□□□ -0.67
VPS29-201ENST00000360579 KRT8P05787 483 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 ELANEP08246 267 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 ANXA8P13928 327 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 NFYBP25208 207 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 POU3F4P49335 361 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 SNU13P55769 128 aaKnown RBP10.87□□□□□ -0.67
VPS29-201ENST00000360579 MTCP1P56278 107 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 BNIP1Q12981 228 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 FOXE3Q13461 319 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 TRIM25Q14258 630 aaKnown RBP10.87□□□□□ -0.67
VPS29-201ENST00000360579 ODF4Q2M2E3 257 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 DEFB136Q30KP8 78 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 ZNF260Q3ZCT1 412 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 HSP90B2PQ58FF3 399 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 KRBOX4Q5JUW0 171 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 TMEM236Q5W0B7 351 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 MEPCEQ7L2J0 689 aaKnown RBP10.87□□□□□ -0.67
VPS29-201ENST00000360579 RNF152Q8N8N0 203 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 CHST4Q8NCG5 386 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 HAVCR2Q8TDQ0 301 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 RHOFQ9HBH0 211 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 CLN6Q9NWW5 311 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 H2AFY2Q9P0M6 372 aaPredicted RBP10.87□□□□□ -0.67
VPS29-201ENST00000360579 GSTK1Q9Y2Q3 226 aa10.87□□□□□ -0.67
VPS29-201ENST00000360579 CSMD3Q7Z407 3707 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 KBTBD11-OT1A0A1B0GTJ5 212 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 A0A1W2PPI3 338 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 J3QR06 171 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 CCRL2O00421 344 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 MAGEB4O15481 346 aaPredicted RBP10.86□□□□□ -0.67
VPS29-201ENST00000360579 RRP9O43818 475 aaKnown RBP10.86□□□□□ -0.67
VPS29-201ENST00000360579 SNX3O60493 162 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 RPP14O95059 124 aaKnown RBP10.86□□□□□ -0.67
VPS29-201ENST00000360579 IGKV1D-33P01593 117 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 IGKV1-33P01594 117 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 ZNF44P15621 663 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 HOXB6P17509 224 aaKnown RBP10.86□□□□□ -0.67
VPS29-201ENST00000360579 PRKACBP22694 351 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 GPR50Q13585 617 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 HNF4GQ14541 408 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 LHFPL2Q6ZUX7 228 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 TMEM179BQ7Z7N9 219 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 CATSPERDQ86XM0 798 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 TGIF2LXQ8IUE1 241 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 YIPF7Q8N8F6 280 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 ZNF565Q8N9K5 539 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 DNAJC9Q8WXX5 260 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 KIRREL1Q96J84 757 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 LRGUKQ96M69 825 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 COMMD4Q9H0A8 199 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 ZMAT4Q9H898 229 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 ADGRL4Q9HBW9 690 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 ARL8BQ9NVJ2 186 aa10.86□□□□□ -0.67
VPS29-201ENST00000360579 CALCBP10092 127 aa10.85□□□□□ -0.67
VPS29-201ENST00000360579 GPR12P47775 334 aa10.85□□□□□ -0.67
VPS29-201ENST00000360579 PDZK1IP1Q13113 114 aa10.85□□□□□ -0.67
VPS29-201ENST00000360579 FHL3Q13643 280 aa10.85□□□□□ -0.67
VPS29-201ENST00000360579 C17orf58Q2M2W7 97 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms