RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 GALNT14Q96FL9 552 aa12.87□□□□□ -0.35
TPM3-208ENST00000341485 ZNF442Q9H7R0 627 aa12.87□□□□□ -0.35
TPM3-208ENST00000341485 STARD10Q9Y365 291 aa12.87□□□□□ -0.35
TPM3-208ENST00000341485 AHRRA9YTQ3 701 aa12.86□□□□□ -0.35
TPM3-208ENST00000341485 DEDDO75618 318 aa12.86□□□□□ -0.35
TPM3-208ENST00000341485 RPL7L1Q6DKI1 246 aaKnown RBP12.86□□□□□ -0.35
TPM3-208ENST00000341485 MRPL21Q7Z2W9 205 aaKnown RBP12.86□□□□□ -0.35
TPM3-208ENST00000341485 GCNT2Q8N0V5 402 aa12.86□□□□□ -0.35
TPM3-208ENST00000341485 MOB3AQ96BX8 217 aa12.86□□□□□ -0.35
TPM3-208ENST00000341485 LRRC46Q96FV0 321 aa12.86□□□□□ -0.35
TPM3-208ENST00000341485 NARS2Q96I59 477 aaKnown RBP12.86□□□□□ -0.35
TPM3-208ENST00000341485 HS3ST6Q96QI5 342 aa12.86□□□□□ -0.35
TPM3-208ENST00000341485 ZNF629Q9UEG4 869 aaPredicted RBP12.86□□□□□ -0.35
TPM3-208ENST00000341485 KCNIP3Q9Y2W7 256 aa12.86□□□□□ -0.35
TPM3-208ENST00000341485 ARHGAP21Q5T5U3 1957 aa12.86□□□□□ -0.35
TPM3-208ENST00000341485 SPTBN2O15020 2390 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 NGFP01138 241 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 AADACP22760 399 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 ID4P47928 161 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 GPM6AP51674 278 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 ARHGDIBP52566 201 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 MST1LQ2TV78 715 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 SMUG1Q53HV7 270 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 FBXW9Q5XUX1 488 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 OR11L1Q8NGX0 322 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 WNT2BQ93097 391 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 APOBEC3DQ96AK3 386 aaPredicted RBP12.85□□□□□ -0.35
TPM3-208ENST00000341485 ZNF71Q9NQZ8 489 aaPredicted RBP12.85□□□□□ -0.35
TPM3-208ENST00000341485 SLC2A9Q9NRM0 540 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 LSM5Q9Y4Y9 91 aaKnown RBP12.85□□□□□ -0.35
TPM3-208ENST00000341485 SHANK1Q9Y566 2161 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 ASPMQ8IZT6 3477 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 TAAR5O14804 337 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 CST4P01036 141 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 RPL12P30050 165 aaKnown RBP12.85□□□□□ -0.35
TPM3-208ENST00000341485 HAAOP46952 286 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 UCP3P55916 312 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 RAB1AP62820 205 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 DEFA5Q01523 94 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 ACSF3Q4G176 576 aaPredicted RBP12.85□□□□□ -0.35
TPM3-208ENST00000341485 ZDHHC23Q8IYP9 409 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 CNEP1R1Q8N9A8 125 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 OR5L1Q8NGL2 311 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 LHFPL5Q8TAF8 219 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 POM121Q96HA1 1249 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 POM121L2Q96KW2 1035 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 ZC4H2Q9NQZ6 224 aa12.85□□□□□ -0.35
TPM3-208ENST00000341485 FAM90A10PA6NDY2 464 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM90A18PA6NE21 464 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM90A16PA6NEW6 464 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM90A20PA6NIJ5 464 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM90A8PA6NJQ4 464 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM90A7PA6NKC0 464 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM90A22PA8MWA6 464 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM90A12PA8MX19 464 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM90A5PA8MXJ8 464 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM90A23PA8MXZ1 464 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 NUPL2O15504 423 aaKnown RBP12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM90A15PP0C7V4 464 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM90A13PP0C7W8 464 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM90A14PP0C7W9 464 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM90A24PP0C7X0 464 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 RCC1P18754 421 aaPredicted RBP12.84□□□□□ -0.35
TPM3-208ENST00000341485 GLP1RP43220 463 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 SMCO1Q147U7 214 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 CEACAM21Q3KPI0 293 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 IGSF11Q5DX21 431 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 LIAT1Q6ZQX7 453 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM214BQ7L5A3 538 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 LYZL2Q7Z4W2 148 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 SAXO1Q8IYX7 474 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 LRTM2Q8N967 370 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 C9orf106Q8NAJ2 232 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 ARL11Q969Q4 196 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 C18orf12Q96KH6 178 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 RSRP1Q9BUV0 290 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 SUCNR1Q9BXA5 334 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 TMEM218A2RU14 115 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 ZNF705EA8MWA4 302 aaPredicted RBP12.84□□□□□ -0.35
TPM3-208ENST00000341485 ZNF732B4DXR9 585 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 K7EPK0 472 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 SCGB1D2O95969 90 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 MBPP02686 304 aaPredicted RBP12.84□□□□□ -0.35
TPM3-208ENST00000341485 GLI4P10075 376 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 ATF4P18848 351 aaPredicted RBP12.84□□□□□ -0.35
TPM3-208ENST00000341485 ARR3P36575 388 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 AKR1C2P52895 323 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FGF12P61328 243 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 AKR1C1Q04828 323 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FAM71E2Q8N5Q1 922 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 MSI2Q96DH6 328 aaKnown RBP12.84□□□□□ -0.35
TPM3-208ENST00000341485 IL36RNQ9UBH0 155 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 LPAR3Q9UBY5 353 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 FBXL17Q9UF56 701 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 AMDHD2Q9Y303 409 aa12.84□□□□□ -0.35
TPM3-208ENST00000341485 ARID1AO14497 2285 aa12.83□□□□□ -0.35
TPM3-208ENST00000341485 H7C1Q1 480 aa12.83□□□□□ -0.36
TPM3-208ENST00000341485 DNASE2O00115 360 aaPredicted RBP12.83□□□□□ -0.36
TPM3-208ENST00000341485 ABCD4O14678 606 aa12.83□□□□□ -0.36
TPM3-208ENST00000341485 HERV-K104P61576 105 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms