RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CLVS1Q8IUQ0 354 aaPredicted RBP7.24□□□□□ -1.25
HMGB1-203ENST00000341423 SLC35B4Q969S0 331 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 TMEM45BQ96B21 275 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 NTNG2Q96CW9 530 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 TSPAN32Q96QS1 320 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 SLX1AQ9BQ83 275 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 PATZ1Q9HBE1 687 aaKnown RBP7.24□□□□□ -1.25
HMGB1-203ENST00000341423 RASL12Q9NYN1 266 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 UBQLN2Q9UHD9 624 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 ZNF736B4DX44 427 aaPredicted RBP7.24□□□□□ -1.25
HMGB1-203ENST00000341423 MPV17P39210 176 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 PCLAFQ15004 111 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 ASCL4Q6XD76 172 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 TERB2Q8NHR7 220 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 GTF2H4Q92759 462 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 FUZQ9BT04 418 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 MFFQ9GZY8 342 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 SLC25A22Q9H936 323 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 NUDT15Q9NV35 164 aa7.24□□□□□ -1.25
HMGB1-203ENST00000341423 MRPL22Q9NWU5 206 aaKnown RBP7.24□□□□□ -1.25
HMGB1-203ENST00000341423 GABRPO00591 440 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 SDHDO14521 159 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 NGFRP08138 427 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 ZNF74Q16587 644 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 SLC25A53Q5H9E4 307 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 CBLL1Q75N03 491 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 ZNF679Q8IYX0 411 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 OR1M1Q8NGA1 313 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 NDUFA13Q9P0J0 144 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 LGALS13Q9UHV8 139 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 NPIPB11E5RHQ5 1161 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 BMPR1BO00238 502 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 CTSBP07858 339 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 NPPCP23582 126 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 LYZP61626 148 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 OR10K1Q8NGX5 313 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 ZNF385AQ96PM9 386 aaKnown RBP7.23□□□□□ -1.25
HMGB1-203ENST00000341423 NRIP2Q9BQI9 281 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 STUB1Q9UNE7 303 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 H3BMH7 237 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 TRAF3IP2O43734 574 aaPredicted RBP7.23□□□□□ -1.25
HMGB1-203ENST00000341423 CA11O75493 328 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 CTAG2O75638 210 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 MEF2DQ14814 521 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 SAMD12Q8N8I0 201 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 TSSC4Q9Y5U2 329 aaPredicted RBP7.23□□□□□ -1.25
HMGB1-203ENST00000341423 LYL1P12980 280 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 CEACAM6P40199 344 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 HES5Q5TA89 166 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 KLHDC8BQ8IXV7 354 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 WDFY2Q96P53 400 aa7.23□□□□□ -1.25
HMGB1-203ENST00000341423 ANKHD1Q8IWZ3 2542 aaKnown RBP7.22□□□□□ -1.25
HMGB1-203ENST00000341423 DHRS3O75911 302 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 ORM1P02763 201 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 EGR3Q06889 387 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 CBLN3Q6UW01 205 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 OVCH2Q7RTZ1 564 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 PPP1R27Q86WC6 154 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 RMI2Q96E14 147 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 C4orf36Q96KX1 117 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 MAGIXQ9H6Y5 334 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 OR11H12B2RN74 326 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 NPFFO15130 113 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 SC5DO75845 299 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 IGHMP01871 453 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 CD5P06127 495 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 PAGE3Q5JUK9 113 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 TMEM182Q6ZP80 229 aaPredicted RBP7.22□□□□□ -1.25
HMGB1-203ENST00000341423 FAM156AQ8NDB6 213 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 NFAM1Q8NET5 270 aaPredicted RBP7.22□□□□□ -1.25
HMGB1-203ENST00000341423 J3KRW8 73 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 TNFSF13O75888 250 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 CLEC2LP0C7M8 214 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 OGFRL1Q5TC84 451 aaPredicted RBP7.22□□□□□ -1.25
HMGB1-203ENST00000341423 ZNF561Q8N587 486 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 TMEM38AQ9H6F2 299 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 RANGRFQ9HD47 186 aaPredicted RBP7.22□□□□□ -1.25
HMGB1-203ENST00000341423 V9GY05 133 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 RGS13O14921 159 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 HPGDSO60760 199 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 SCTP09683 121 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 ALKBH1Q13686 389 aaKnown RBP7.22□□□□□ -1.25
HMGB1-203ENST00000341423 TIGITQ495A1 244 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 OR2G6Q5TZ20 316 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 LRRTM1Q86UE6 522 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 UBALD1Q8TB05 177 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 DVL3Q92997 716 aaPredicted RBP7.22□□□□□ -1.25
HMGB1-203ENST00000341423 TLNRD1Q9H1K6 362 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 C20orf85Q9H1P6 137 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 PLSCR4Q9NRQ2 329 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 RAB26Q9ULW5 256 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 STARD10Q9Y365 291 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 R4GMQ9 66 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 MED13LQ71F56 2210 aa7.22□□□□□ -1.25
HMGB1-203ENST00000341423 PLPP3O14495 311 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 LALBAP00709 142 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 ZNF415Q09FC8 603 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 FXYD3Q14802 87 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 TREML4Q6UXN2 200 aa7.21□□□□□ -1.25
HMGB1-203ENST00000341423 SEH1LQ96EE3 360 aa7.21□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms