RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 LINC01387J3KSC0 135 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 PSG5Q15238 335 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 CADM4Q8NFZ8 388 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 NAA60Q9H7X0 242 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 SH2D2AQ9NP31 389 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 KCNMB2Q9Y691 235 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 SCN11AQ9UI33 1791 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 LOC105371267A0A1B0GV96 52 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 PATE3B3GLJ2 98 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 ZFPL1O95159 310 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 MDH2P40926 338 aaKnown RBP11.16□□□□□ -0.62
SDC3-201ENST00000336798 INPP5JQ15735 1006 aaPredicted RBP11.16□□□□□ -0.62
SDC3-201ENST00000336798 LINC00299Q6ZSB3 139 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 OR8B12Q8NGG6 310 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 PHYHIPLQ96FC7 376 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 TMEM204Q9BSN7 226 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 EVPLQ92817 2033 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 TRA2AQ13595 282 aaKnown RBP eCLIP11.16□□□□□ -0.62
SDC3-201ENST00000336798 NKG7Q16617 165 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 NSUN5P2Q63ZY6 315 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 Q6ZN92 141 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 ZNF547Q8IVP9 402 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 WDR13Q9H1Z4 485 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 MMP26Q9NRE1 261 aa11.16□□□□□ -0.62
SDC3-201ENST00000336798 LOC389332A0A1B0GUA5 103 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 ARRDC5A6NEK1 342 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 RGS13O14921 159 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 RAB29O14966 203 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 GSTZ1O43708 216 aaPredicted RBP11.15□□□□□ -0.62
SDC3-201ENST00000336798 BRS3P32247 399 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 DUSP21Q9H596 190 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 TMED3Q9Y3Q3 217 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 HAX1O00165 279 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 CXCL10P02778 98 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 CTLA4P16410 223 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 ZNF137PP52743 207 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 EIF3IQ13347 325 aaKnown RBP11.15□□□□□ -0.62
SDC3-201ENST00000336798 VSTM2LQ96N03 204 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 LPAR5Q9H1C0 372 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 CHODLQ9H9P2 273 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 FAM60AQ9NP50 221 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 M0R296 226 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 CCL21O00585 134 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 CTAG2O75638 210 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 HAND1O96004 215 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 OR2W3Q7Z3T1 314 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 ARRDC1Q8N5I2 433 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 ZNF764Q96H86 408 aaPredicted RBP11.15□□□□□ -0.62
SDC3-201ENST00000336798 GPX7Q96SL4 187 aaPredicted RBP11.15□□□□□ -0.62
SDC3-201ENST00000336798 OR4C46A6NHA9 309 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 CGB1A6NKQ9 187 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 HPXP02790 462 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 EPHA8P29322 1005 aaPredicted RBP11.15□□□□□ -0.62
SDC3-201ENST00000336798 SELENOPP49908 381 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 DHRS2Q13268 280 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 FAHD2BQ6P2I3 314 aaPredicted RBP11.15□□□□□ -0.62
SDC3-201ENST00000336798 TCTEX1D1Q8N7M0 179 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 OR4D9Q8NGE8 314 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 FAM222BQ8WU58 562 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 FAHD2AQ96GK7 314 aa11.15□□□□□ -0.62
SDC3-201ENST00000336798 PACRGQ96M98 296 aaPredicted RBP11.15□□□□□ -0.62
SDC3-201ENST00000336798 AURKAIP1Q9NWT8 199 aaPredicted RBP11.15□□□□□ -0.62
SDC3-201ENST00000336798 TCRBV16S1A1N1A0A5B0 115 aa11.15□□□□□ -0.63
SDC3-201ENST00000336798 ARG1P05089 322 aa11.15□□□□□ -0.63
SDC3-201ENST00000336798 GCSHP23434 173 aa11.15□□□□□ -0.63
SDC3-201ENST00000336798 SKP2Q13309 424 aa11.15□□□□□ -0.63
SDC3-201ENST00000336798 LIAT1Q6ZQX7 453 aa11.15□□□□□ -0.63
SDC3-201ENST00000336798 OR8A1Q8NGG7 326 aa11.15□□□□□ -0.63
SDC3-201ENST00000336798 OR1K1Q8NGR3 316 aa11.15□□□□□ -0.63
SDC3-201ENST00000336798 RAB40CQ96S21 281 aa11.15□□□□□ -0.63
SDC3-201ENST00000336798 P2RX4Q99571 388 aa11.15□□□□□ -0.63
SDC3-201ENST00000336798 CST4P01036 141 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 OR1L1Q8NH94 360 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 SIRT7Q9NRC8 400 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 OR6C3Q9NZP0 311 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 FOXL2P58012 376 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 MRPL54Q6P161 138 aaKnown RBP11.14□□□□□ -0.63
SDC3-201ENST00000336798 SEZ6L2Q6UXD5 910 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 CDX2Q99626 313 aaPredicted RBP11.14□□□□□ -0.63
SDC3-201ENST00000336798 AKIRIN1Q9H9L7 192 aaPredicted RBP11.14□□□□□ -0.63
SDC3-201ENST00000336798 IGKV3D-11A0A0A0MRZ8 115 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 PDCD6O75340 191 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 ADAP1O75689 374 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 IGKV3-11P04433 115 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 MELTFP08582 738 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 GUCA2BQ16661 112 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 NTNG2Q96CW9 530 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 WNT16Q9UBV4 365 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 EXOGQ9Y2C4 368 aaKnown RBP11.14□□□□□ -0.63
SDC3-201ENST00000336798 INSIG2Q9Y5U4 225 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 SEMA7AO75326 666 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 NKX2-2O95096 273 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 C1QL3Q5VWW1 255 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 C12orf73Q69YU5 71 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 SOSTQ9BQB4 213 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 IL20Q9NYY1 176 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 TNFSF14O43557 240 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 PGA3P0DJD8 388 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 RNF165Q6ZSG1 346 aa11.14□□□□□ -0.63
SDC3-201ENST00000336798 SLC26A10Q8NG04 563 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms