RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 NEK7Q8TDX7 302 aa12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 OR5P3Q8WZ94 311 aa12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 CUL9Q8IWT3 2517 aa12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 K7EPK0 472 aa12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 PHF1O43189 567 aaPredicted RBP12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 SCTP09683 121 aa12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 RPL12P30050 165 aaKnown RBP12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 LIAT1Q6ZQX7 453 aa12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 MKXQ8IYA7 352 aa12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 GCNT2Q8N0V5 402 aa12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 FAM71E2Q8N5Q1 922 aa12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 LHFPL5Q8TAF8 219 aa12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 RNF141Q8WVD5 230 aa12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 MSI2Q96DH6 328 aaKnown RBP12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 TMEM100Q9NV29 134 aa12.72□□□□□ -0.37
CLCNKA-201ENST00000331433 LAMA5O15230 3695 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 ANKRD30BLA7E2S9 258 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 WISP2O76076 250 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 DIRAS3O95661 229 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 NAPSAO96009 420 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 MBPP02686 304 aaPredicted RBP12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 CELA3BP08861 270 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 FAM157CP0CG43 387 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 CA6P23280 308 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 CCL11P51671 97 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 SMCO1Q147U7 214 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 PXDC1Q5TGL8 231 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 C17orf78Q8N4C9 275 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 MARC2Q969Z3 335 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 TP53RKQ96S44 253 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 PRRX2Q99811 253 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 RSRP1Q9BUV0 290 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 SUCNR1Q9BXA5 334 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 PIGMQ9H3S5 423 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 Q9N2K0 584 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 RCC2Q9P258 522 aaKnown RBP12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 BOD1L1Q8NFC6 3051 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 UCP3P55916 312 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 CLEC9AQ6UXN8 241 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 MEX3BQ6ZN04 569 aaKnown RBP12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 PIP4P1Q86T03 277 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 SUMF1Q8NBK3 374 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 SYT3Q9BQG1 590 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 SMIM3Q9BZL3 60 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 PARD6AQ9NPB6 346 aa12.71□□□□□ -0.37
CLCNKA-201ENST00000331433 PRR14LQ5THK1 2151 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 NUPL2O15504 423 aaKnown RBP12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 FTH1P19P0C7X4 201 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 HERPUD1Q15011 391 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 FDCSPQ8NFU4 85 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 OR52M1Q8NGK5 317 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 POM121Q96HA1 1249 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 C18orf12Q96KH6 178 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 GPHA2Q96T91 129 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 OPA3Q9H6K4 179 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 FBXL17Q9UF56 701 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 ZNF705EA8MWA4 302 aaPredicted RBP12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 TSPAN4O14817 238 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 RHBDL1O75783 438 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 GNRHRP30968 328 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 SOX8P57073 446 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 MPV17LQ2QL34 196 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 P4HA3Q7Z4N8 544 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 LRTM2Q8N967 370 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 SECTM1Q8WVN6 248 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 NANOS1Q8WY41 292 aaKnown RBP12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 TAF9BQ9HBM6 251 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 AMDHD2Q9Y303 409 aa12.7□□□□□ -0.38
CLCNKA-201ENST00000331433 CDRT15L2A8MXV6 281 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 HS3ST1O14792 307 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 TMEM33P57088 247 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 DEFA5Q01523 94 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 C20orf204Q6ZNR8 217 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 CCDC36Q8IYA8 594 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 LGI3Q8N145 548 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 CCDC71LQ8N9Z2 235 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 SUMF2Q8NBJ7 301 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 RDH5Q92781 318 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 FAM86C1Q9NVL1 165 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 MPC1Q9Y5U8 109 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 SVILO95425 2214 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 LOC105371267A0A1B0GV96 52 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 H7C1Q1 480 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 MPPED1O15442 326 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 TK1P04183 234 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 WT1P19544 449 aaPredicted RBP12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 GNG3P63215 75 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 SPIN3Q5JUX0 258 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 Q6ZS49 121 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 SLC35G3Q8N808 338 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 BSCL2Q96G97 398 aaPredicted RBP12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 PLSCR2Q9NRY7 297 aa12.69□□□□□ -0.38
CLCNKA-201ENST00000331433 IGKV1D-13A0A0B4J2D9 117 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 IGKV1-6A0A0C4DH72 117 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 C3orf85A0A1B0GTC6 90 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 TAAR5O14804 337 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 LYZL6O75951 148 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 IGKV1-13P0DP09 117 aa12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 IDH3GP51553 393 aaPredicted RBP12.68□□□□□ -0.38
CLCNKA-201ENST00000331433 ERVS71-1P61550 626 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms