RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 ZNF626Q68DY1 528 aa13.21□□□□□ -0.29
LSM1-201ENST00000311351 DMKNQ6E0U4 476 aaPredicted RBP13.21□□□□□ -0.29
LSM1-201ENST00000311351 BRICD5Q6PL45 260 aa13.21□□□□□ -0.29
LSM1-201ENST00000311351 BAIAP2L2Q6UXY1 529 aa13.21□□□□□ -0.29
LSM1-201ENST00000311351 FBLIM1Q8WUP2 373 aa13.21□□□□□ -0.29
LSM1-201ENST00000311351 COQ2Q96H96 371 aa13.21□□□□□ -0.29
LSM1-201ENST00000311351 NR1H4Q96RI1 486 aaPredicted RBP13.21□□□□□ -0.29
LSM1-201ENST00000311351 VCX3BQ9H321 246 aa13.21□□□□□ -0.29
LSM1-201ENST00000311351 CHCHD3Q9NX63 227 aaKnown RBP13.21□□□□□ -0.29
LSM1-201ENST00000311351 ZNF281Q9Y2X9 895 aa13.21□□□□□ -0.29
LSM1-201ENST00000311351 SESN1Q9Y6P5 492 aa13.21□□□□□ -0.29
LSM1-201ENST00000311351 A0A0G2JK05 382 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 TRBV5-5A0A0J9YX44 114 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 EFCAB10A6NFE3 127 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 MAGEB3O15480 346 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 LMO1P25800 156 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 TGFBR2P37173 567 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 MTNR1BP49286 362 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 PROK1P58294 105 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 MED21Q13503 144 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 DDI2Q5TDH0 399 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 PXT1Q8NFP0 134 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 BPIFB6Q8NFQ5 453 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 OR11H6Q8NGC7 330 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 PIFOQ8TCI5 191 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 GHSRQ92847 366 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 PGLYRP3Q96LB9 341 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 PPIL3Q9H2H8 161 aaKnown RBP13.2□□□□□ -0.3
LSM1-201ENST00000311351 ZNF696Q9H7X3 374 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 RHOFQ9HBH0 211 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 CNOT2Q9NZN8 540 aaKnown RBP13.2□□□□□ -0.3
LSM1-201ENST00000311351 PSORS1C1Q9UIG5 152 aa13.2□□□□□ -0.3
LSM1-201ENST00000311351 UBE2J1Q9Y385 318 aaPredicted RBP13.2□□□□□ -0.3
LSM1-201ENST00000311351 TBL2Q9Y4P3 447 aaKnown RBP13.2□□□□□ -0.3
LSM1-201ENST00000311351 TRGV10A0A0A0MS01 117 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 IGHV2-26A0A0B4J1V2 119 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 MEGF11A6BM72 1044 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 FAM172BPA6NC97 362 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 MAGEA13PA6NCF6 341 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 H0YJX3 145 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 DEGS1O15121 323 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 CHST1O43916 411 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 TSPAN9O75954 239 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 CDRT1O95170 752 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 JUNBP17275 347 aaPredicted RBP13.19□□□□□ -0.3
LSM1-201ENST00000311351 C21orf33P30042 268 aaPredicted RBP13.19□□□□□ -0.3
LSM1-201ENST00000311351 GDNFP39905 211 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 RPS11P62280 158 aaKnown RBP eCLIP13.19□□□□□ -0.3
LSM1-201ENST00000311351 PPP3R1P63098 170 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 FAM189A2Q15884 450 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 AANATQ16613 207 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 PIGYQ3MUY2 71 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 CHST4Q8NCG5 386 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 CPNE2Q96FN4 548 aaPredicted RBP13.19□□□□□ -0.3
LSM1-201ENST00000311351 CITED1Q99966 193 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 TMEM133Q9H2Q1 129 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 C16orf95Q9H693 158 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 ZNF581Q9P0T4 197 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 VWFP04275 2813 aa13.19□□□□□ -0.3
LSM1-201ENST00000311351 CMYA5Q8N3K9 4069 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 ODAMA1E959 279 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 MYL12BO14950 172 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 CSN2P05814 226 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 CDK2P24941 298 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 BDKRB2P30411 391 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 RAB13P51153 203 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 RSU1Q15404 277 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 SSX2Q16385 188 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 KRBOX4Q5JUW0 171 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 ELP2Q6IA86 826 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 SLC35E4Q6ICL7 350 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 STX19Q8N4C7 294 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 NRG4Q8WWG1 115 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 TFAP2CQ92754 450 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 FOXRED1Q96CU9 486 aaPredicted RBP13.18□□□□□ -0.3
LSM1-201ENST00000311351 OR14A2Q96R54 314 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 CLEC7AQ9BXN2 247 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 GAL3ST2Q9H3Q3 398 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 TMEM138Q9NPI0 162 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 PLCXD1Q9NUJ7 323 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 SIGLEC9Q9Y336 463 aa13.18□□□□□ -0.3
LSM1-201ENST00000311351 TRAV8-7A0A075B6U6 113 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 TRAV24A0A0B4J272 114 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 A0A1W2PPK0 400 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 FUOMA2VDF0 154 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 HTR3BO95264 441 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 ALDOBP05062 364 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 IGFBP3P17936 291 aaPredicted RBP13.17□□□□□ -0.3
LSM1-201ENST00000311351 ZNF93P35789 620 aaPredicted RBP13.17□□□□□ -0.3
LSM1-201ENST00000311351 PTGFRP43088 359 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 AQP4P55087 323 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 RIPK1Q13546 671 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 Q499Y3 187 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 PAN3Q58A45 887 aaKnown RBP13.17□□□□□ -0.3
LSM1-201ENST00000311351 YIF1BQ5BJH7 314 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 ASCL4Q6XD76 172 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 OR51T1Q8NGJ9 327 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 ZNF184Q99676 751 aaPredicted RBP13.17□□□□□ -0.3
LSM1-201ENST00000311351 FKBP14Q9NWM8 211 aa13.17□□□□□ -0.3
LSM1-201ENST00000311351 TCF19Q9Y242 345 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms