RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 BRWD1Q9NSI6 2320 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 TRAV14DV4A0A0A6YYC5 116 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 C1QL1O75973 258 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 ERVFC1-1P60608 527 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 ZNF816Q0VGE8 651 aaPredicted RBP16.97■□□□□ 0.31
USP48-201ENST00000308271 ANKRD37Q7Z713 158 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 IGKV1D-42A0A075B6H8 117 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 IL2RAP01589 272 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 SLX1AQ9BQ83 275 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 SPINT1O43278 529 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 HSPB1P04792 205 aaKnown RBP16.97■□□□□ 0.31
USP48-201ENST00000308271 HLA-GP17693 338 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 SLC35E3Q7Z769 313 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 S100A7AQ86SG5 101 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 H1FOOQ8IZA3 346 aaPredicted RBP16.97■□□□□ 0.31
USP48-201ENST00000308271 OR5B3Q8NH48 314 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 TMEM147Q9BVK8 224 aa16.97■□□□□ 0.31
USP48-201ENST00000308271 DICER1Q9UPY3 1922 aaKnown RBP16.97■□□□□ 0.31
USP48-201ENST00000308271 OR7C2O60412 319 aa16.96■□□□□ 0.31
USP48-201ENST00000308271 HSBP1O75506 76 aa16.96■□□□□ 0.31
USP48-201ENST00000308271 ACTL6AO96019 429 aa16.96■□□□□ 0.31
USP48-201ENST00000308271 UBE2G1P62253 170 aa16.96■□□□□ 0.31
USP48-201ENST00000308271 NUFIP2Q7Z417 695 aaKnown RBP16.96■□□□□ 0.31
USP48-201ENST00000308271 C12orf49Q9H741 205 aa16.96■□□□□ 0.31
USP48-201ENST00000308271 A0A1W2PNV4 684 aa16.96■□□□□ 0.31
USP48-201ENST00000308271 CER1O95813 267 aa16.96■□□□□ 0.31
USP48-201ENST00000308271 GLULP15104 373 aa16.96■□□□□ 0.31
USP48-201ENST00000308271 CDC34P49427 236 aaPredicted RBP16.96■□□□□ 0.31
USP48-201ENST00000308271 HABP2Q14520 560 aaPredicted RBP16.96■□□□□ 0.31
USP48-201ENST00000308271 POM121Q96HA1 1249 aa16.96■□□□□ 0.31
USP48-201ENST00000308271 TPRP12270 2363 aaKnown RBP16.96■□□□□ 0.31
USP48-201ENST00000308271 PLGLAQ15195 96 aa16.96■□□□□ 0.31
USP48-201ENST00000308271 Q8IYB0 196 aa16.96■□□□□ 0.31
USP48-201ENST00000308271 RPP25Q9BUL9 199 aaKnown RBP16.96■□□□□ 0.31
USP48-201ENST00000308271 FKBP11Q9NYL4 201 aa16.96■□□□□ 0.31
USP48-201ENST00000308271 CXorf65A6NEN9 183 aa16.96■□□□□ 0.3
USP48-201ENST00000308271 ZNF205O95201 554 aa16.96■□□□□ 0.3
USP48-201ENST00000308271 TBX6O95947 436 aaPredicted RBP16.96■□□□□ 0.3
USP48-201ENST00000308271 TRGC2P03986 189 aa16.96■□□□□ 0.3
USP48-201ENST00000308271 GAPTQ8N292 157 aa16.96■□□□□ 0.3
USP48-201ENST00000308271 BSCL2Q96G97 398 aaPredicted RBP16.96■□□□□ 0.3
USP48-201ENST00000308271 DOK5Q9P104 306 aa16.96■□□□□ 0.3
USP48-201ENST00000308271 DOCK3Q8IZD9 2030 aa16.95■□□□□ 0.3
USP48-201ENST00000308271 DVL1O14640 695 aa16.95■□□□□ 0.3
USP48-201ENST00000308271 PRDX4Q13162 271 aa16.95■□□□□ 0.3
USP48-201ENST00000308271 CMTM2Q8TAZ6 248 aa16.95■□□□□ 0.3
USP48-201ENST00000308271 IL22RA2Q969J5 263 aa16.95■□□□□ 0.3
USP48-201ENST00000308271 SLC35E1Q96K37 410 aa16.95■□□□□ 0.3
USP48-201ENST00000308271 CHRDL1Q9BU40 450 aa16.95■□□□□ 0.3
USP48-201ENST00000308271 IGHV1OR21-1A0A087WYE8 117 aa16.95■□□□□ 0.3
USP48-201ENST00000308271 A0A1W2PP11 408 aa16.95■□□□□ 0.3
USP48-201ENST00000308271 SSUH2Q9Y2M2 353 aa16.95■□□□□ 0.3
USP48-201ENST00000308271 DANCRP0C864 163 aa16.95■□□□□ 0.3
USP48-201ENST00000308271 FZD5Q13467 585 aa16.95■□□□□ 0.3
USP48-201ENST00000308271 HFEQ30201 348 aa16.95■□□□□ 0.3
USP48-201ENST00000308271 POC1AQ8NBT0 407 aa16.95■□□□□ 0.3
USP48-201ENST00000308271 ATG2BQ96BY7 2078 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 KLRC4-KLRK1H3BQV0 150 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 GABRA4P48169 554 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 TMEM252Q8N6L7 170 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 GNRHR2Q96P88 292 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 GSN-AS1Q9NRJ2 163 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 GPR27Q9NS67 375 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 SCN10AQ9Y5Y9 1956 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 K7EQS6 105 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 CYB5R3P00387 301 aaPredicted RBP16.94■□□□□ 0.3
USP48-201ENST00000308271 PNLIPP16233 465 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 HDHD3Q9BSH5 251 aaPredicted RBP16.94■□□□□ 0.3
USP48-201ENST00000308271 BCL2P10415 239 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 C9orf40Q8IXQ3 194 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 CT45A6P0DMU7 189 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 CT45A5P0DMU8 189 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 CT45A7P0DMV0 189 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 RAC1P63000 192 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 LBHQ53QV2 105 aaPredicted RBP16.94■□□□□ 0.3
USP48-201ENST00000308271 CT45A1Q5HYN5 189 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 SLC24A4Q8NFF2 622 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 CT45A3Q8NHU0 189 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 TREM2Q9NZC2 230 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 NAT8BQ9UHF3 227 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 FUT9Q9Y231 359 aa16.94■□□□□ 0.3
USP48-201ENST00000308271 A6NCN8 305 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 LMX1BO60663 402 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 DDTP30046 118 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 ZNF468Q5VIY5 522 aaPredicted RBP16.93■□□□□ 0.3
USP48-201ENST00000308271 TCTEX1D1Q8N7M0 179 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 OR11L1Q8NGX0 322 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 A0A1B0GTI1 187 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 TMEM30CPA0ZSE6 113 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 MMP9P14780 707 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 LINC00696Q6ZRV3 163 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 RP1P56715 2156 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 A0A1B0GU03 582 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 CRYM-AS1A6NIL9 109 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 FAM166BA8MTA8 275 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 TMEM14DPA8MWL7 114 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 FCN1O00602 326 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 PIAS2O75928 621 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 HEXAP06865 529 aa16.93■□□□□ 0.3
USP48-201ENST00000308271 PMCHP20382 165 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms