RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CD1AP06126 327 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 MMP9P14780 707 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 FHITP49789 147 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 SLC26A1Q9H2B4 701 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 FUT9Q9Y231 359 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 OR8U8P0C7N1 319 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 DDTP30046 118 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 ZNF468Q5VIY5 522 aaPredicted RBP13.51□□□□□ -0.25
SHH-201ENST00000297261 PINX1Q96BK5 328 aaKnown RBP13.51□□□□□ -0.25
SHH-201ENST00000297261 ESRP2Q9H6T0 727 aaKnown RBP13.51□□□□□ -0.25
SHH-201ENST00000297261 OCIAD1Q9NX40 245 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 A0A096LPE4 126 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 A0A1W2PPZ6 126 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 SIRPB1O00241 398 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 IGKV1D-16P01601 117 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 PRAMEF5Q5TYX0 476 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 FAM78BQ5VT40 261 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 PRAMEF6Q5VXH4 476 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 OR2T10Q8NGZ9 312 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 PITPNC1Q9UKF7 332 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 SLC25A6P12236 298 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 RUNX1Q01196 453 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 EWSR1Q01844 656 aaKnown RBP eCLIP13.51□□□□□ -0.25
SHH-201ENST00000297261 PNRC1Q12796 327 aaPredicted RBP13.51□□□□□ -0.25
SHH-201ENST00000297261 ZNF154Q13106 437 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 SURF2Q15527 256 aaPredicted RBP13.51□□□□□ -0.25
SHH-201ENST00000297261 TIGITQ495A1 244 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 TIPARPQ7Z3E1 657 aaKnown RBP13.51□□□□□ -0.25
SHH-201ENST00000297261 ANKRD37Q7Z713 158 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 MSI2Q96DH6 328 aaKnown RBP13.51□□□□□ -0.25
SHH-201ENST00000297261 MRGPRX4Q96LA9 322 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 HDHD3Q9BSH5 251 aaPredicted RBP13.51□□□□□ -0.25
SHH-201ENST00000297261 SLC2A9Q9NRM0 540 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 CLCF1Q9UBD9 225 aa13.51□□□□□ -0.25
SHH-201ENST00000297261 CACNA1EQ15878 2313 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 DOCK9Q9BZ29 2069 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 COL4A4P53420 1690 aaPredicted RBP13.5□□□□□ -0.25
SHH-201ENST00000297261 MSGN1A6NI15 193 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 ALG1L2C9J202 215 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 TOX3O15405 576 aaPredicted RBP13.5□□□□□ -0.25
SHH-201ENST00000297261 CHST1O43916 411 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 CLN3Q13286 438 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 CYB5R2Q6BCY4 276 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 LIAT1Q6ZQX7 453 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 FLVCR1-AS1Q8TAF5 88 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 AQP7P3A6NL99 342 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 H0YL77 283 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 AQP7O14520 342 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 DHRS3O75911 302 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 IGHEP01854 428 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 ZXDAP98168 799 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 C6orf15Q6UXA7 325 aaPredicted RBP13.5□□□□□ -0.25
SHH-201ENST00000297261 TIMM10BQ9Y5J6 103 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 ESPL1Q14674 2120 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 LMX1BO60663 402 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 GCH1P30793 250 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 P2RY1P47900 373 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 PTTG1IPP53801 180 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 HABP2Q14520 560 aaPredicted RBP13.5□□□□□ -0.25
SHH-201ENST00000297261 CEBPEQ15744 281 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 ADPRHL1Q8NDY3 354 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 OR4C5Q8NGB2 326 aa13.5□□□□□ -0.25
SHH-201ENST00000297261 ERRFI1Q9UJM3 462 aaPredicted RBP13.5□□□□□ -0.25
SHH-201ENST00000297261 IGHV5-10-1A0A0J9YXX1 117 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 SPSB1Q96BD6 273 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 ZNF501Q96CX3 271 aaPredicted RBP13.49□□□□□ -0.25
SHH-201ENST00000297261 SLC35D1Q9NTN3 355 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 CACNG5Q9UF02 275 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 PRSS50Q9UI38 385 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 R4GN57 208 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 HSBP1O75506 76 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 RANP62826 216 aaKnown RBP13.49□□□□□ -0.25
SHH-201ENST00000297261 FAM3AP98173 230 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 ZNF260Q3ZCT1 412 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 FAM131CQ96AQ9 280 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 FKBP11Q9NYL4 201 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 GPR132Q9UNW8 380 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 LHX6Q9UPM6 363 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 PPP1CCP36873 323 aaKnown RBP13.49□□□□□ -0.25
SHH-201ENST00000297261 OR5I1Q13606 314 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 ACER2Q5QJU3 275 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 C22orf15Q8WYQ4 148 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 AURKAIP1Q9NWT8 199 aaPredicted RBP13.49□□□□□ -0.25
SHH-201ENST00000297261 DMRT1Q9Y5R6 373 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 AKAP6Q13023 2319 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 RNF224P0DH78 156 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 ZNF17P17021 662 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 MMP16P51512 607 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 P2RY4P51582 365 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 INSM1Q01101 510 aaPredicted RBP13.49□□□□□ -0.25
SHH-201ENST00000297261 TMPRSS7Q7RTY8 843 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 MCHR2Q969V1 340 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 MYOTQ9UBF9 498 aa13.49□□□□□ -0.25
SHH-201ENST00000297261 MDC1Q14676 2089 aaKnown RBP13.48□□□□□ -0.25
SHH-201ENST00000297261 NKX2-6A6NCS4 301 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 CCL4P13236 92 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 IL11RAQ14626 422 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 ANKRD55Q3KP44 614 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 HOGA1Q86XE5 327 aa13.48□□□□□ -0.25
SHH-201ENST00000297261 KLHDC1Q8N7A1 406 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms