RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 Q8IYB0 196 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 OR52N5Q8NH56 324 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 ISOC2Q96AB3 205 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 C6orf106Q9H6K1 298 aaPredicted RBP8.78□□□□□ -1
COL6A3-201ENST00000295550 PITPNC1Q9UKF7 332 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 LIPGQ9Y5X9 500 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 MELTFP08582 738 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 HOXC4P09017 264 aaPredicted RBP8.78□□□□□ -1
COL6A3-201ENST00000295550 CTGFP29279 349 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 C10orf111Q8N326 155 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 MVB12AQ96EY5 273 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 MED12LQ86YW9 2145 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 MASP2O00187 686 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 CEACAM6P40199 344 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 VMA21Q3ZAQ7 101 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 LRRC10Q5BKY1 277 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 OR10G8Q8NGN5 311 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 OTOSQ8NHW6 89 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 SIRT7Q9NRC8 400 aa8.78□□□□□ -1
COL6A3-201ENST00000295550 DYNLT3P51808 116 aa8.77□□□□□ -1
COL6A3-201ENST00000295550 OR1D5P58170 312 aa8.77□□□□□ -1
COL6A3-201ENST00000295550 TTC32Q5I0X7 151 aa8.77□□□□□ -1
COL6A3-201ENST00000295550 FBXL14Q8N1E6 418 aa8.77□□□□□ -1
COL6A3-201ENST00000295550 OIT3Q8WWZ8 545 aa8.77□□□□□ -1
COL6A3-201ENST00000295550 FBXO17Q96EF6 278 aa8.77□□□□□ -1
COL6A3-201ENST00000295550 SLC17A2O00624 439 aa8.77□□□□□ -1
COL6A3-201ENST00000295550 SUMO3P55854 103 aaPredicted RBP8.77□□□□□ -1
COL6A3-201ENST00000295550 ZXDAP98168 799 aa8.77□□□□□ -1
COL6A3-201ENST00000295550 RBPMS2Q6ZRY4 209 aaKnown RBP8.77□□□□□ -1
COL6A3-201ENST00000295550 TGIF2LYQ8IUE0 185 aa8.77□□□□□ -1
COL6A3-201ENST00000295550 KCNE4Q8WWG9 221 aa8.77□□□□□ -1
COL6A3-201ENST00000295550 TBX15Q96SF7 602 aa8.77□□□□□ -1
COL6A3-201ENST00000295550 TMEM218A2RU14 115 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 H7C2G1 150 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 RAB29O14966 203 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 MBPP02686 304 aaPredicted RBP8.77□□□□□ -1.01
COL6A3-201ENST00000295550 DAOP14920 347 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 ST6GAL1P15907 406 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 HLA-GP17693 338 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 FUT3P21217 361 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 THOC3Q96J01 351 aaKnown RBP8.77□□□□□ -1.01
COL6A3-201ENST00000295550 TMEM56Q96MV1 263 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 FGF21Q9NSA1 209 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 RASL12Q9NYN1 266 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 MMP17Q9ULZ9 603 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 LRP12Q9Y561 859 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 SHBQ15464 509 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 GABRA6Q16445 453 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 ALKBH6Q3KRA9 238 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 OR10V1Q8NGI7 309 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 NAV3Q8IVL0 2385 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 IGHV3-20A0A0C4DH32 117 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 CSNK1EP49674 416 aaKnown RBP8.77□□□□□ -1.01
COL6A3-201ENST00000295550 UBE2L3P68036 154 aaKnown RBP8.77□□□□□ -1.01
COL6A3-201ENST00000295550 RIGQ13278 110 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 FZD2Q14332 565 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 PLA1AQ53H76 456 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 DMRTC1Q5HYR2 192 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 LILRA6Q6PI73 481 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 MOGAT1Q96PD6 335 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 GPA33Q99795 319 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 MMP25Q9NPA2 562 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 PLXND1Q9Y4D7 1925 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 NKX2-2O95096 273 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 ACP1P24666 158 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 ZIC1Q15915 447 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 FAM74A3Q4VXF1 159 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 MOB3BQ86TA1 216 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 SLC7A10Q9NS82 523 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 OCIAD1Q9NX40 245 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 MED13Q9UHV7 2174 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 CYR61O00622 381 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 CA2P00918 260 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 IER3P46695 156 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 TAS2R60P59551 318 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 ZADH2Q8N4Q0 377 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 DEFB108BQ8NET1 73 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 OR10G4Q8NGN3 311 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 OR10G9Q8NGN4 311 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 OR10G7Q8NGN6 311 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 FER1L6-AS2Q96M78 137 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 RSG1Q9BU20 258 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 TMEM215Q68D42 235 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 ORAI1Q96D31 301 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 P01737 135 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 OR5AC1P0C628 307 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 SELENOPP49908 381 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 D2HGDHQ8N465 521 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 DHCR7Q9UBM7 475 aaKnown RBP8.77□□□□□ -1.01
COL6A3-201ENST00000295550 PRSS50Q9UI38 385 aa8.77□□□□□ -1.01
COL6A3-201ENST00000295550 POU2F2P09086 479 aa8.76□□□□□ -1.01
COL6A3-201ENST00000295550 CD1BP29016 333 aa8.76□□□□□ -1.01
COL6A3-201ENST00000295550 NSUN5P2Q63ZY6 315 aa8.76□□□□□ -1.01
COL6A3-201ENST00000295550 RLN3Q8WXF3 142 aa8.76□□□□□ -1.01
COL6A3-201ENST00000295550 ZFP30Q9Y2G7 519 aa8.76□□□□□ -1.01
COL6A3-201ENST00000295550 PRR14LQ5THK1 2151 aa8.76□□□□□ -1.01
COL6A3-201ENST00000295550 NAT2P11245 290 aa8.76□□□□□ -1.01
COL6A3-201ENST00000295550 RPS27P42677 84 aaKnown RBP8.76□□□□□ -1.01
COL6A3-201ENST00000295550 PNLIPRP2P54317 469 aa8.76□□□□□ -1.01
COL6A3-201ENST00000295550 CLDN15P56746 228 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms