RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 SECTM1Q8WVN6 248 aa15.73■□□□□ 0.11
SHKBP1-201ENST00000291842 LOXL4Q96JB6 756 aa15.73■□□□□ 0.11
SHKBP1-201ENST00000291842 C18orf12Q96KH6 178 aa15.73■□□□□ 0.11
SHKBP1-201ENST00000291842 SYT3Q9BQG1 590 aa15.73■□□□□ 0.11
SHKBP1-201ENST00000291842 SUCNR1Q9BXA5 334 aa15.73■□□□□ 0.11
SHKBP1-201ENST00000291842 NKX6-2Q9C056 277 aaPredicted RBP15.73■□□□□ 0.11
SHKBP1-201ENST00000291842 FAM96BQ9Y3D0 163 aa15.73■□□□□ 0.11
SHKBP1-201ENST00000291842 A0A1W2PR80 420 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 MED6O75586 246 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 ATG12O94817 140 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 IL18BPO95998 194 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 CST4P01036 141 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 COX5BP10606 129 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 PRKACAP17612 351 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 SPIN3Q5JUX0 258 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 C17orf78Q8N4C9 275 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 HIST1H2AAQ96QV6 131 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 TSNAXQ99598 290 aaKnown RBP15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 RSRP1Q9BUV0 290 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 TREM1Q9NP99 234 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 SPRR3Q9UBC9 169 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 TAAR5O14804 337 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 AGPAT2O15120 278 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 F12P00748 615 aaPredicted RBP15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 GNRHRP30968 328 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 ARG2P78540 354 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 PMP22Q01453 160 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 SLC35G3Q8N808 338 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 Q8NFD4 153 aa15.72■□□□□ 0.11
SHKBP1-201ENST00000291842 HS3ST1O14792 307 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 SS18L1O75177 396 aaPredicted RBP15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 CD46P15529 392 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 APLNRP35414 380 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 CLN3Q13286 438 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 OR2T2Q6IF00 324 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 LGI3Q8N145 548 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 ZFP62Q8NB50 900 aaPredicted RBP15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 Q9N2K0 584 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 MMP26Q9NRE1 261 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 ZFHX4Q86UP3 3567 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 ESPL1Q14674 2120 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 C3orf85A0A1B0GTC6 90 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 H7C1Q1 480 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 UCP3P55916 312 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 ZNF169Q14929 603 aaPredicted RBP15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 HERPUD1Q15011 391 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 TMEM268Q5VZI3 342 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 FBXW12Q6X9E4 464 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 MDP1Q86V88 176 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 MKXQ8IYA7 352 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 WDYHV1Q96HA8 205 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 RNF122Q9H9V4 155 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 TMEM9BQ9NQ34 198 aa15.71■□□□□ 0.11
SHKBP1-201ENST00000291842 F8W036 122 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 TRIM77I1YAP6 450 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 MPPED1O15442 326 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 TPD52L2O43399 206 aaKnown RBP15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 CA6P23280 308 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 BLOC1S1P78537 153 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 PUSL1Q8N0Z8 303 aaKnown RBP15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 OR5P3Q8WZ94 311 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 RDH5Q92781 318 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 TRGV5A0A0B4J1U4 118 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 IGKV1D-13A0A0B4J2D9 117 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 IGHV3-64DA0A0J9YX35 117 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 NAPSAO96009 420 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 IGKV1-13P0DP09 117 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 ZNF766Q5HY98 468 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 C20orf204Q6ZNR8 217 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 ZNF818PQ6ZRF7 136 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 MYPOPQ86VE0 399 aaPredicted RBP15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 LRTM2Q8N967 370 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 CCDC71LQ8N9Z2 235 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 OR5A2Q8NGI9 324 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 OR1K1Q8NGR3 316 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 TLNRD1Q9H1K6 362 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 ZDHHC8Q9ULC8 765 aa15.7■□□□□ 0.1
SHKBP1-201ENST00000291842 SLC22A20A6NK97 555 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 ANKRD30BLA7E2S9 258 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 E5RGE8 158 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 RHBDL1O75783 438 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 TK1P04183 234 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 ASCL1P50553 236 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 EIF5AP63241 154 aaKnown RBP15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 PJVKQ0ZLH3 352 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 SRSF6Q13247 344 aaKnown RBP15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 TMEM88Q6PEY1 159 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 DPPA2Q7Z7J5 298 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 TBC1D26Q86UD7 250 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 SUMF1Q8NBK3 374 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 SMIM8Q96KF7 97 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 IP6K3Q96PC2 410 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 FAM86C1Q9NVL1 165 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 NSG2Q9Y328 171 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 SPENQ96T58 3664 aaKnown RBP15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 FAM90A10PA6NDY2 464 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 FAM90A18PA6NE21 464 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 FAM90A16PA6NEW6 464 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 FAM90A20PA6NIJ5 464 aa15.69■□□□□ 0.1
SHKBP1-201ENST00000291842 FAM90A8PA6NJQ4 464 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms