RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 GPHA2Q96T91 129 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 TRAPPC2LH3BP13 241 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 BET1O15155 118 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 SCTP09683 121 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 CLN3Q13286 438 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 MST1LQ2TV78 715 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 MEX3BQ6ZN04 569 aaKnown RBP17.19■□□□□ 0.34
VPS53-201ENST00000291074 CCDC36Q8IYA8 594 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 OR1K1Q8NGR3 316 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 BSCL2Q96G97 398 aaPredicted RBP17.19■□□□□ 0.34
VPS53-201ENST00000291074 TAF9BQ9HBM6 251 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 AMDHD2Q9Y303 409 aa17.19■□□□□ 0.34
VPS53-201ENST00000291074 ZFHX4Q86UP3 3567 aa17.18■□□□□ 0.34
VPS53-201ENST00000291074 TRGV5A0A0B4J1U4 118 aa17.18■□□□□ 0.34
VPS53-201ENST00000291074 APLNRP35414 380 aa17.18■□□□□ 0.34
VPS53-201ENST00000291074 MDP1Q86V88 176 aa17.18■□□□□ 0.34
VPS53-201ENST00000291074 OR52M1Q8NGK5 317 aa17.18■□□□□ 0.34
VPS53-201ENST00000291074 C18orf12Q96KH6 178 aa17.18■□□□□ 0.34
VPS53-201ENST00000291074 RSRP1Q9BUV0 290 aa17.18■□□□□ 0.34
VPS53-201ENST00000291074 SUCNR1Q9BXA5 334 aa17.18■□□□□ 0.34
VPS53-201ENST00000291074 SLC22A20A6NK97 555 aa17.18■□□□□ 0.34
VPS53-201ENST00000291074 TRIP6Q15654 476 aaKnown RBP17.18■□□□□ 0.34
VPS53-201ENST00000291074 MYPOPQ86VE0 399 aaPredicted RBP17.18■□□□□ 0.34
VPS53-201ENST00000291074 ERGIC1Q969X5 290 aa17.18■□□□□ 0.34
VPS53-201ENST00000291074 TMEM231Q9H6L2 316 aa17.18■□□□□ 0.34
VPS53-201ENST00000291074 LPAR3Q9UBY5 353 aa17.18■□□□□ 0.34
VPS53-201ENST00000291074 CFAP47Q6ZTR5 3102 aa17.18■□□□□ 0.34
VPS53-201ENST00000291074 A0A1W2PR80 420 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 ABCD4O14678 606 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 FBXO24O75426 580 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 UCP3P55916 312 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 TMEM33P57088 247 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 ZNF273Q14593 569 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 OR2T2Q6IF00 324 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 SAXO1Q8IYX7 474 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 C17orf78Q8N4C9 275 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 OR4A4PQ8NGN8 299 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 OR5P3Q8WZ94 311 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 ARL11Q969Q4 196 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 HIST1H2AAQ96QV6 131 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 Q9N2K0 584 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 RAB19A4D1S5 217 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 NAPSAO96009 420 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 ADCYAP1P18509 176 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 PMELP40967 661 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 HERPUD1Q15011 391 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 WNT2BQ93097 391 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 RCC2Q9P258 522 aaKnown RBP17.17■□□□□ 0.34
VPS53-201ENST00000291074 GLS2Q9UI32 602 aa17.17■□□□□ 0.34
VPS53-201ENST00000291074 FAM90A10PA6NDY2 464 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 FAM90A18PA6NE21 464 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 FAM90A16PA6NEW6 464 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 FAM90A20PA6NIJ5 464 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 FAM90A8PA6NJQ4 464 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 FAM90A7PA6NKC0 464 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 FAM90A22PA8MWA6 464 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 FAM90A12PA8MX19 464 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 FAM90A5PA8MXJ8 464 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 FAM90A23PA8MXZ1 464 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 H7C1Q1 480 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 FAM90A15PP0C7V4 464 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 FAM90A13PP0C7W8 464 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 FAM90A14PP0C7W9 464 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 FAM90A24PP0C7X0 464 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 FBXW9Q5XUX1 488 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 MKXQ8IYA7 352 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 OR5A2Q8NGI9 324 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 SECTM1Q8WVN6 248 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 BCL2L2Q92843 193 aaPredicted RBP17.16■□□□□ 0.34
VPS53-201ENST00000291074 SYT3Q9BQG1 590 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 HRH4Q9H3N8 390 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 PLA2G2EQ9NZK7 142 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 SPENQ96T58 3664 aaKnown RBP17.16■□□□□ 0.34
VPS53-201ENST00000291074 GNRHRP30968 328 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 LGI3Q8N145 548 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 SLC35G3Q8N808 338 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 LRTM2Q8N967 370 aa17.16■□□□□ 0.34
VPS53-201ENST00000291074 TMEM218A2RU14 115 aa17.15■□□□□ 0.34
VPS53-201ENST00000291074 ANKRD30BLA7E2S9 258 aa17.15■□□□□ 0.34
VPS53-201ENST00000291074 TAAR5O14804 337 aa17.15■□□□□ 0.34
VPS53-201ENST00000291074 CELA3BP08861 270 aa17.15■□□□□ 0.34
VPS53-201ENST00000291074 CA6P23280 308 aa17.15■□□□□ 0.34
VPS53-201ENST00000291074 UQCC3Q6UW78 93 aa17.15■□□□□ 0.34
VPS53-201ENST00000291074 IGKV1D-13A0A0B4J2D9 117 aa17.15■□□□□ 0.34
VPS53-201ENST00000291074 IGKV1-13P0DP09 117 aa17.15■□□□□ 0.34
VPS53-201ENST00000291074 LPAR6P43657 344 aa17.15■□□□□ 0.34
VPS53-201ENST00000291074 SPIN3Q5JUX0 258 aa17.15■□□□□ 0.34
VPS53-201ENST00000291074 TMEM268Q5VZI3 342 aa17.15■□□□□ 0.34
VPS53-201ENST00000291074 CCDC71LQ8N9Z2 235 aa17.15■□□□□ 0.34
VPS53-201ENST00000291074 ZDHHC8Q9ULC8 765 aa17.15■□□□□ 0.34
VPS53-201ENST00000291074 FAM74A7A6NL05 159 aa17.14■□□□□ 0.34
VPS53-201ENST00000291074 GPR31O00270 319 aa17.14■□□□□ 0.34
VPS53-201ENST00000291074 HS3ST1O14792 307 aa17.14■□□□□ 0.34
VPS53-201ENST00000291074 MPPED1O15442 326 aa17.14■□□□□ 0.34
VPS53-201ENST00000291074 MED6O75586 246 aa17.14■□□□□ 0.34
VPS53-201ENST00000291074 RHBDL1O75783 438 aa17.14■□□□□ 0.34
VPS53-201ENST00000291074 WISP2O76076 250 aa17.14■□□□□ 0.34
VPS53-201ENST00000291074 FAM74A3Q4VXF1 159 aa17.14■□□□□ 0.34
VPS53-201ENST00000291074 C20orf204Q6ZNR8 217 aa17.14■□□□□ 0.34
VPS53-201ENST00000291074 RDH5Q92781 318 aa17.14■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms