RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 LRRC75BQ2VPJ9 315 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 MRGPRGQ86SM5 289 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 MFRPQ9BY79 579 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 RNF186Q9NXI6 227 aa12.43□□□□□ -0.42
CCDC88A-201ENST00000263630 A0A1W2PS18 150 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 IER3P46695 156 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 FAM78AQ5JUQ0 283 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 NRSN2Q9GZP1 204 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 MIOXQ9UGB7 285 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 TCL1AP56279 114 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 PABPC1L2AQ5JQF8 200 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 OR8D4Q8NGM9 314 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 UQCR10Q9UDW1 63 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 PRNDQ9UKY0 176 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 TBX21Q9UL17 535 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 MPC2O95563 127 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 DHRS2Q13268 280 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 SLC37A2Q8TED4 501 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 A8MWL6 223 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 J3KRW8 73 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 HIST1H1DP16402 221 aaKnown RBP12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 HOXA6P31267 233 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 ZG16BQ96DA0 208 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 ZNF385DQ9H6B1 395 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 FGF20Q9NP95 211 aaPredicted RBP12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 LAMB4A4D0S4 1761 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 TRGV5A0A0B4J1U4 118 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 SP6Q3SY56 376 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 C10orf128Q5T292 105 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 FAHD2BQ6P2I3 314 aaPredicted RBP12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 C2orf88Q9BSF0 95 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 COL3A1P02461 1466 aaPredicted RBP12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 SLC25A20O43772 301 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 CLPPQ16740 277 aaPredicted RBP12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 TMEM78Q5T7P6 136 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 NSUN5P2Q63ZY6 315 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 CA13Q8N1Q1 262 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 CXXC4Q9H2H0 198 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 MAP1LC3AQ9H492 121 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 CD74P04233 296 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 ISL1P61371 349 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 ARF6P62330 175 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 C16orf82Q7Z2V1 217 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 SCD5Q86SK9 330 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 SLC25A40Q8TBP6 338 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 GHITMQ9H3K2 345 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 PHLDA3Q9Y5J5 127 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 KIAA1217Q5T5P2 1943 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 GPR3P46089 330 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 TM4SF20Q53R12 229 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 PRSS54Q6PEW0 395 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 PRNTQ86SH4 94 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 RIMBP3CA6NJZ7 1639 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 RIMBP3BA6NNM3 1639 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 RIMBP3Q9UFD9 1639 aa12.42□□□□□ -0.42
CCDC88A-201ENST00000263630 SHISA7A6NL88 538 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 FAHD1Q6P587 224 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 LRRC75AQ8NAA5 344 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 OR4B1Q8NGF8 309 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 TM4SF19Q96DZ7 209 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 DNAJB12Q9NXW2 375 aaKnown RBP12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 PPP6CO00743 305 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 MT-ND6P03923 174 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 NPPBP16860 134 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 LGALSLQ3ZCW2 172 aaPredicted RBP12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 GALNT14Q96FL9 552 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 SMDT1Q9H4I9 107 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 LRP12Q9Y561 859 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 DEFB108AA8MXU0 73 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 IGHV4-34P06331 123 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 COX7A1P24310 79 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 AWAT1Q58HT5 328 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 MON2Q7Z3U7 1717 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 OR4C45A6NMZ5 311 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 TYMSP04818 313 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 AVPR2P30518 371 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 LEMD1Q68G75 181 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 MRPL54Q6P161 138 aaKnown RBP12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 DDX60Q8IY21 1712 aaKnown RBP12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 CCDC144NLQ6NUI1 221 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 ABHD3Q8WU67 409 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 MS4A6EQ96DS6 147 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 SLC35B1P78383 322 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 OR4X1Q8NH49 305 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 DDB2Q92466 427 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 PDXPQ96GD0 296 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 METTL26Q96S19 204 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 TRDCB7Z8K6 153 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 TNFSF15O95150 251 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 MEF2CQ06413 473 aaPredicted RBP12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 SLC16A13Q7RTY0 426 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 CXorf67Q86X51 503 aaPredicted RBP12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 AKAP11Q9UKA4 1901 aa12.41□□□□□ -0.42
CCDC88A-201ENST00000263630 TMEM131LA2VDJ0 1609 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 TAPBPO15533 448 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 S1PR2O95136 353 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 PRDX2P32119 198 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 CXCL13O43927 109 aa12.4□□□□□ -0.42
CCDC88A-201ENST00000263630 ZNF83P51522 516 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms