RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 C11orf1Q9H5F2 150 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 VPS13AQ96RL7 3174 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM90A10PA6NDY2 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM90A18PA6NE21 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM90A16PA6NEW6 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM90A20PA6NIJ5 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM90A8PA6NJQ4 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM90A7PA6NKC0 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM90A22PA8MWA6 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM90A12PA8MX19 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM90A5PA8MXJ8 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM90A23PA8MXZ1 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM90A15PP0C7V4 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM90A13PP0C7W8 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM90A14PP0C7W9 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM90A24PP0C7X0 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 BCL3P20749 454 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 SRPXP78539 464 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 HABP2Q14520 560 aaPredicted RBP13.11□□□□□ -0.31
DDX56-201ENST00000258772 NRN1LQ496H8 165 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 C5orf24Q7Z6I8 188 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 DPPA2Q7Z7J5 298 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 OR2C3Q8N628 320 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 TMEM56Q96MV1 263 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 IER2Q9BTL4 223 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 REPIN1Q9BWE0 567 aaKnown RBP13.11□□□□□ -0.31
DDX56-201ENST00000258772 PAPOLGQ9BWT3 736 aaKnown RBP13.11□□□□□ -0.31
DDX56-201ENST00000258772 SPACA1Q9HBV2 294 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 FAM86C1Q9NVL1 165 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 NOSIPQ9Y314 301 aaKnown RBP13.11□□□□□ -0.31
DDX56-201ENST00000258772 TMEM56-RWDD3S4R434 201 aa13.11□□□□□ -0.31
DDX56-201ENST00000258772 C7orf77A4D0Y5 90 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 FAM24AA6NFZ4 105 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 MRPL33O75394 65 aaKnown RBP13.1□□□□□ -0.31
DDX56-201ENST00000258772 F10P00742 488 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 SNRNP70P08621 437 aaKnown RBP13.1□□□□□ -0.31
DDX56-201ENST00000258772 ASCL1P50553 236 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 FOXO1Q12778 655 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 AWAT1Q58HT5 328 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 TBC1D26Q86UD7 250 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 OR56B2PQ8NGI1 322 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 SFT2D1Q8WV19 159 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 HIST1H2BAQ96A08 127 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 Q9N2K0 584 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 UBE2J1Q9Y385 318 aaPredicted RBP13.1□□□□□ -0.31
DDX56-201ENST00000258772 B4E171 279 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 CER1O95813 267 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 TDGF1P13385 188 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 CCNOP22674 350 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 TSPAN7P41732 249 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 NKX2-1P43699 371 aaPredicted RBP13.1□□□□□ -0.31
DDX56-201ENST00000258772 RAB5BP61020 215 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 ARF1P84077 181 aaKnown RBP13.1□□□□□ -0.31
DDX56-201ENST00000258772 SSPNQ14714 243 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 SRSF7Q16629 238 aaKnown RBP eCLIP13.1□□□□□ -0.31
DDX56-201ENST00000258772 SPIN3Q5JUX0 258 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 PEAR1Q5VY43 1037 aaPredicted RBP13.1□□□□□ -0.31
DDX56-201ENST00000258772 ZNF695Q8IW36 515 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 SLAMF9Q96A28 289 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 IP6K3Q96PC2 410 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 HS3ST6Q96QI5 342 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 ATPIF1Q9UII2 106 aa13.1□□□□□ -0.31
DDX56-201ENST00000258772 MED19A0JLT2 244 aaPredicted RBP13.09□□□□□ -0.31
DDX56-201ENST00000258772 NAPSAO96009 420 aa13.09□□□□□ -0.31
DDX56-201ENST00000258772 TK1P04183 234 aa13.09□□□□□ -0.31
DDX56-201ENST00000258772 IFNA4P05014 189 aa13.09□□□□□ -0.31
DDX56-201ENST00000258772 PTAFRP25105 342 aa13.09□□□□□ -0.31
DDX56-201ENST00000258772 HAAOP46952 286 aa13.09□□□□□ -0.31
DDX56-201ENST00000258772 PRDX4Q13162 271 aa13.09□□□□□ -0.31
DDX56-201ENST00000258772 DCAF12Q5T6F0 453 aa13.09□□□□□ -0.31
DDX56-201ENST00000258772 TMEM182Q6ZP80 229 aaPredicted RBP13.09□□□□□ -0.31
DDX56-201ENST00000258772 UBALD2Q8IYN6 164 aa13.09□□□□□ -0.31
DDX56-201ENST00000258772 SELENOHQ8IZQ5 122 aaKnown RBP13.09□□□□□ -0.31
DDX56-201ENST00000258772 FGF23Q9GZV9 251 aaPredicted RBP13.09□□□□□ -0.31
DDX56-201ENST00000258772 CRIM1Q9NZV1 1036 aa13.09□□□□□ -0.31
DDX56-201ENST00000258772 IGKV3D-15A0A087WSY6 115 aa13.08□□□□□ -0.31
DDX56-201ENST00000258772 K7N7A8 449 aa13.08□□□□□ -0.31
DDX56-201ENST00000258772 ZNHIT1O43257 154 aa13.08□□□□□ -0.31
DDX56-201ENST00000258772 SERPINA7P05543 415 aa13.08□□□□□ -0.31
DDX56-201ENST00000258772 SCTP09683 121 aa13.08□□□□□ -0.31
DDX56-201ENST00000258772 RND3P61587 244 aa13.08□□□□□ -0.31
DDX56-201ENST00000258772 POLR2GP62487 172 aaKnown RBP eCLIP13.08□□□□□ -0.31
DDX56-201ENST00000258772 RNF212Q495C1 297 aa13.08□□□□□ -0.31
DDX56-201ENST00000258772 C9orf135Q5VTT2 229 aa13.08□□□□□ -0.31
DDX56-201ENST00000258772 SPINK14Q6IE38 97 aa13.08□□□□□ -0.31
DDX56-201ENST00000258772 ZNF818PQ6ZRF7 136 aa13.08□□□□□ -0.31
DDX56-201ENST00000258772 SUMF1Q8NBK3 374 aa13.08□□□□□ -0.31
DDX56-201ENST00000258772 PSMF1Q92530 271 aa13.08□□□□□ -0.31
DDX56-201ENST00000258772 PBDC1Q9BVG4 233 aa13.08□□□□□ -0.31
DDX56-201ENST00000258772 TUBA4BQ9H853 241 aa13.08□□□□□ -0.31
DDX56-201ENST00000258772 A0A096LPE4 126 aa13.08□□□□□ -0.32
DDX56-201ENST00000258772 A0A1W2PPZ6 126 aa13.08□□□□□ -0.32
DDX56-201ENST00000258772 IGSF23A1L1A6 192 aa13.08□□□□□ -0.32
DDX56-201ENST00000258772 M0R036 132 aa13.08□□□□□ -0.32
DDX56-201ENST00000258772 CCL2P13500 99 aa13.08□□□□□ -0.32
DDX56-201ENST00000258772 ZNF44P15621 663 aa13.08□□□□□ -0.32
DDX56-201ENST00000258772 GPM6AP51674 278 aa13.08□□□□□ -0.32
DDX56-201ENST00000258772 FGF12P61328 243 aa13.08□□□□□ -0.32
DDX56-201ENST00000258772 CLINT1Q14677 625 aa13.08□□□□□ -0.32
DDX56-201ENST00000258772 TIPARPQ7Z3E1 657 aaKnown RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms