RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 CSRP2Q16527 193 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 C12orf54Q6X4T0 127 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 SMIM4Q8WVI0 70 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 BCL2L2Q92843 193 aaPredicted RBP11.29□□□□□ -0.6
USP40-201ENST00000251722 SNX22Q96L94 193 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 COX7A2P2O60397 106 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 GFRA3O60609 400 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 PDCD6O75340 191 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 HAND1O96004 215 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 NMBP08949 121 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 CDAP32320 146 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 TGFBR1P36897 503 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 PUSL1Q8N0Z8 303 aaKnown RBP11.29□□□□□ -0.6
USP40-201ENST00000251722 GTF3AQ92664 365 aaKnown RBP11.29□□□□□ -0.6
USP40-201ENST00000251722 LRRC3BQ96PB8 259 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 RSG1Q9BU20 258 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 ZNF71Q9NQZ8 489 aaPredicted RBP11.29□□□□□ -0.6
USP40-201ENST00000251722 RNF7Q9UBF6 113 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 ING1Q9UK53 422 aaPredicted RBP11.29□□□□□ -0.6
USP40-201ENST00000251722 STARD10Q9Y365 291 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 TTC32Q5I0X7 151 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 OR2M3Q8NG83 312 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 OR4S1Q8NGB4 309 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 PPP1R1CQ8WVI7 109 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 ZNF501Q96CX3 271 aaPredicted RBP11.29□□□□□ -0.6
USP40-201ENST00000251722 TNFRSF12AQ9NP84 129 aa11.29□□□□□ -0.6
USP40-201ENST00000251722 KISS1Q15726 138 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 MOB3AQ96BX8 217 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 TMEM128Q5BJH2 165 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 CCDC144NLQ6NUI1 221 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 GLRX5Q86SX6 157 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 C2orf88Q9BSF0 95 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 CLDN16Q9Y5I7 305 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 KIAA0100Q14667 2235 aaKnown RBP11.28□□□□□ -0.6
USP40-201ENST00000251722 GALR1P47211 349 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 NUTF2P61970 127 aaKnown RBP11.28□□□□□ -0.6
USP40-201ENST00000251722 TMEM267Q0VDI3 215 aaPredicted RBP11.28□□□□□ -0.6
USP40-201ENST00000251722 ZNF774Q6NX45 483 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 OR5AU1Q8NGC0 362 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 OR10AD1Q8NGE0 317 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 EID2BQ96D98 161 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 H0Y8G0 127 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 SDCBPO00560 298 aaPredicted RBP11.28□□□□□ -0.6
USP40-201ENST00000251722 SLC6A1P30531 599 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 FABP5Q01469 135 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 ZP4Q12836 540 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 MIDNQ504T8 468 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 FBXW9Q5XUX1 488 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 SPINK14Q6IE38 97 aa11.28□□□□□ -0.6
USP40-201ENST00000251722 ZMAT3Q9HA38 289 aaKnown RBP11.28□□□□□ -0.6
USP40-201ENST00000251722 A0A1B0GWJ7 208 aa11.27□□□□□ -0.6
USP40-201ENST00000251722 MAP1LC3B2A6NCE7 125 aa11.27□□□□□ -0.6
USP40-201ENST00000251722 SPANXN5Q5MJ07 72 aa11.27□□□□□ -0.6
USP40-201ENST00000251722 NFAM1Q8NET5 270 aaPredicted RBP11.27□□□□□ -0.6
USP40-201ENST00000251722 MAP1LC3BQ9GZQ8 125 aa11.27□□□□□ -0.6
USP40-201ENST00000251722 SMOC1Q9H4F8 434 aa11.27□□□□□ -0.6
USP40-201ENST00000251722 SMDT1Q9H4I9 107 aa11.27□□□□□ -0.6
USP40-201ENST00000251722 AAMDCQ9H7C9 122 aa11.27□□□□□ -0.6
USP40-201ENST00000251722 TAF1LQ8IZX4 1826 aa11.27□□□□□ -0.6
USP40-201ENST00000251722 LRRC3CA6NJW4 275 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 PDE6DO43924 150 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 OR5G3P0C626 314 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 PTHLHP12272 177 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 RAB40CQ96S21 281 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 CCL21O00585 134 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 HLA-DRB3P79483 266 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 ELOBQ15370 118 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 ZBTB34Q8NCN2 500 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 ZNF665Q9H7R5 613 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 NCBP2LA6PVI3 153 aaKnown RBP11.27□□□□□ -0.61
USP40-201ENST00000251722 TNFSF12O43508 249 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 NDUFS6O75380 124 aaKnown RBP11.27□□□□□ -0.61
USP40-201ENST00000251722 GZMHP20718 246 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 HRH1P35367 487 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 COX19Q49B96 90 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 OR2I1PQ8NGU4 316 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 PTPMT1Q8WUK0 201 aaPredicted RBP11.27□□□□□ -0.61
USP40-201ENST00000251722 ISOC2Q96AB3 205 aa11.27□□□□□ -0.61
USP40-201ENST00000251722 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.27□□□□□ -0.61
USP40-201ENST00000251722 ZNF107Q9UII5 783 aaPredicted RBP11.27□□□□□ -0.61
USP40-201ENST00000251722 CDS2O95674 445 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 HIST1H1DP16402 221 aaKnown RBP11.26□□□□□ -0.61
USP40-201ENST00000251722 CA6P23280 308 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 MAGEA5P43359 124 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 ERVFC1-1P60608 527 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 CFAP161Q6P656 301 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 NMES1Q9C002 83 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 WSB1Q9Y6I7 421 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 OOEPA6NGQ2 149 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 DLEU1O43261 78 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 PAX5Q02548 391 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 NHLH1Q02575 133 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 EIF4EBP2Q13542 120 aaPredicted RBP11.26□□□□□ -0.61
USP40-201ENST00000251722 MPV17LQ2QL34 196 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 SPATA46Q5T0L3 261 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 DPPA3Q6W0C5 159 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 PRSS41Q7RTY9 318 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 SAP25Q8TEE9 199 aa11.26□□□□□ -0.61
USP40-201ENST00000251722 BARX1Q9HBU1 254 aaPredicted RBP11.26□□□□□ -0.61
USP40-201ENST00000251722 A0A1W2PPV9 198 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms