RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 SNCAP37840 140 aa14.14□□□□□ -0.15
HOXD3-201ENST00000249440 RAB5CP51148 216 aa14.14□□□□□ -0.15
HOXD3-201ENST00000249440 DAZAP2Q15038 168 aaPredicted RBP14.14□□□□□ -0.15
HOXD3-201ENST00000249440 IGSF11Q5DX21 431 aa14.14□□□□□ -0.15
HOXD3-201ENST00000249440 MEX3BQ6ZN04 569 aaKnown RBP14.14□□□□□ -0.15
HOXD3-201ENST00000249440 PSMF1Q92530 271 aa14.14□□□□□ -0.15
HOXD3-201ENST00000249440 EXTL1Q92935 676 aa14.14□□□□□ -0.15
HOXD3-201ENST00000249440 AKR1E2Q96JD6 320 aa14.14□□□□□ -0.15
HOXD3-201ENST00000249440 REPIN1Q9BWE0 567 aaKnown RBP14.14□□□□□ -0.15
HOXD3-201ENST00000249440 WFDC1Q9HC57 220 aa14.14□□□□□ -0.15
HOXD3-201ENST00000249440 PRSS44E7EML9 344 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 CDS2O95674 445 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 ZNF616Q08AN1 781 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 SRSF7Q16629 238 aaKnown RBP eCLIP14.13□□□□□ -0.15
HOXD3-201ENST00000249440 MIDNQ504T8 468 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 TIPARPQ7Z3E1 657 aaKnown RBP14.13□□□□□ -0.15
HOXD3-201ENST00000249440 BATF2Q8N1L9 274 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 OR56B2PQ8NGI1 322 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 OR4D5Q8NGN0 318 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 ZPBPQ9BS86 351 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 SLC7A10Q9NS82 523 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 RCL1Q9Y2P8 373 aaKnown RBP14.13□□□□□ -0.15
HOXD3-201ENST00000249440 EP300Q09472 2414 aaPredicted RBP14.13□□□□□ -0.15
HOXD3-201ENST00000249440 PQLC2LA1A4F0 135 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 CAMLGP49069 296 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 ARF1P84077 181 aaKnown RBP14.13□□□□□ -0.15
HOXD3-201ENST00000249440 NHLH2Q02577 135 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 AVPI1Q5T686 147 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 DPPA2Q7Z7J5 298 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 IQCF2Q8IXL9 164 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 DMBX1Q8NFW5 382 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 SECTM1Q8WVN6 248 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 TMEM222Q9H0R3 208 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 CACFD1Q9UGQ2 172 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 ZDHHC8Q9ULC8 765 aa14.13□□□□□ -0.15
HOXD3-201ENST00000249440 NME2P1O60361 137 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 TK1P04183 234 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 PRKACAP17612 351 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 BCL3P20749 454 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 GNRHRP30968 328 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 HAAOP46952 286 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 PPT1P50897 306 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 SRYQ05066 204 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 PRDX4Q13162 271 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 SAXO1Q8IYX7 474 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 RXFP4Q8TDU9 374 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 THOC3Q96J01 351 aaKnown RBP14.12□□□□□ -0.15
HOXD3-201ENST00000249440 SMCO4Q9NRQ5 59 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 STRAPQ9Y3F4 350 aaKnown RBP14.12□□□□□ -0.15
HOXD3-201ENST00000249440 PRH1P02810 166 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 CRYBA1P05813 215 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 UCP2P55851 309 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 FGF12P61328 243 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 SLAMF9Q96A28 289 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 FAM173AQ9BQD7 235 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 COL25A1Q9BXS0 654 aaPredicted RBP14.12□□□□□ -0.15
HOXD3-201ENST00000249440 BIN3Q9NQY0 253 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 B4GALT7Q9UBV7 327 aa14.12□□□□□ -0.15
HOXD3-201ENST00000249440 UBE2J1Q9Y385 318 aaPredicted RBP14.12□□□□□ -0.15
HOXD3-201ENST00000249440 A0A096LPE4 126 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 A0A1W2PPZ6 126 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 C5orf49A4QMS7 147 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 TRDCB7Z8K6 153 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 HOXA1P49639 335 aaPredicted RBP14.11□□□□□ -0.15
HOXD3-201ENST00000249440 GUK1Q16774 197 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 CEACAM21Q3KPI0 293 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 SPIN3Q5JUX0 258 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 MRPL21Q7Z2W9 205 aaKnown RBP14.11□□□□□ -0.15
HOXD3-201ENST00000249440 ZNF695Q8IW36 515 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 ZDHHC23Q8IYP9 409 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 ZNF565Q8N9K5 539 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 TMEM56Q96MV1 263 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 SPIN2AQ99865 258 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 SPIN2BQ9BPZ2 258 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 Q9N2K0 584 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 TMEM56-RWDD3S4R434 201 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 MUC6Q6W4X9 2439 aa14.11□□□□□ -0.15
HOXD3-201ENST00000249440 MEX3AA1L020 520 aaKnown RBP14.1□□□□□ -0.15
HOXD3-201ENST00000249440 NAPSAO96009 420 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 COX5BP10606 129 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 GPM6AP51674 278 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 C9orf135Q5VTT2 229 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 TBC1D26Q86UD7 250 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 OR2C3Q8N628 320 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 OR2M7Q8NG81 312 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 APOBEC3DQ96AK3 386 aaPredicted RBP14.1□□□□□ -0.15
HOXD3-201ENST00000249440 BOD1Q96IK1 185 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 EIF5A2Q9GZV4 153 aaKnown RBP14.1□□□□□ -0.15
HOXD3-201ENST00000249440 ZNF703Q9H7S9 590 aaPredicted RBP14.1□□□□□ -0.15
HOXD3-201ENST00000249440 C19orf12Q9NSK7 152 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 COL27A1Q8IZC6 1860 aaPredicted RBP14.1□□□□□ -0.15
HOXD3-201ENST00000249440 PCSK5Q92824 1860 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 HLA-HP01893 362 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 PAX6P26367 422 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 NKX2-1P43699 371 aaPredicted RBP14.1□□□□□ -0.15
HOXD3-201ENST00000249440 KCNJ3P48549 501 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 LHX2P50458 406 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 NOVA1P51513 510 aaKnown RBP14.1□□□□□ -0.15
HOXD3-201ENST00000249440 RND3P61587 244 aa14.1□□□□□ -0.15
HOXD3-201ENST00000249440 EWSR1Q01844 656 aaKnown RBP eCLIP14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms