RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 DUS4LO95620 317 aaKnown RBP19.22■□□□□ 0.67
CDX1-201ENST00000231656 CD40P25942 277 aa19.22■□□□□ 0.67
CDX1-201ENST00000231656 TMEM128Q5BJH2 165 aa19.22■□□□□ 0.67
CDX1-201ENST00000231656 ZNF660Q6AZW8 331 aaPredicted RBP19.22■□□□□ 0.67
CDX1-201ENST00000231656 LPCAT3Q6P1A2 487 aa19.22■□□□□ 0.67
CDX1-201ENST00000231656 Q6ZPA2 131 aa19.22■□□□□ 0.67
CDX1-201ENST00000231656 PKIBQ9C010 78 aa19.22■□□□□ 0.67
CDX1-201ENST00000231656 RCC2Q9P258 522 aaKnown RBP19.22■□□□□ 0.67
CDX1-201ENST00000231656 ANKHD1Q8IWZ3 2542 aaKnown RBP19.22■□□□□ 0.67
CDX1-201ENST00000231656 PLCE1Q9P212 2302 aa19.22■□□□□ 0.67
CDX1-201ENST00000231656 VAMP1P23763 118 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 ZNF81P51508 661 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 TFF3Q07654 80 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 IL24Q13007 206 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 SNTB1Q13884 538 aaKnown RBP19.21■□□□□ 0.67
CDX1-201ENST00000231656 SURF2Q15527 256 aaPredicted RBP19.21■□□□□ 0.67
CDX1-201ENST00000231656 TMEM108Q6UXF1 575 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 ITLN2Q8WWU7 325 aaPredicted RBP19.21■□□□□ 0.67
CDX1-201ENST00000231656 PHB2Q99623 299 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 C12orf4Q9NQ89 552 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 IL36RNQ9UBH0 155 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 FAM221AA4D161 298 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 IQCF6A8MYZ5 107 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 TSC22D2O75157 780 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 AGAP20933 346 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 SORDQ00796 357 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 BAMBIQ13145 260 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 MPV17LQ2QL34 196 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 KLF14Q8TD94 323 aaPredicted RBP19.21■□□□□ 0.67
CDX1-201ENST00000231656 MARS2Q96GW9 593 aaKnown RBP19.21■□□□□ 0.67
CDX1-201ENST00000231656 ZNF442Q9H7R0 627 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 CHD6Q8TD26 2715 aa19.21■□□□□ 0.67
CDX1-201ENST00000231656 TPD52L2O43399 206 aaKnown RBP19.2■□□□□ 0.66
CDX1-201ENST00000231656 PI3P19957 117 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 TUBG1P23258 451 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 PTAFRP25105 342 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 SSTR2P30874 369 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 ALKBH6Q3KRA9 238 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 LIN54Q6MZP7 749 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 ZNF767PQ75MW2 155 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 WDR86Q86TI4 376 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 C1orf174Q8IYL3 243 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 CASTOR1Q8WTX7 329 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 RTL8AQ9BWD3 113 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 TUBG2Q9NRH3 451 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 DECR2Q9NUI1 292 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 NECAP2Q9NVZ3 263 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 NDRG3Q9UGV2 375 aa19.2■□□□□ 0.66
CDX1-201ENST00000231656 DBX1A6NMT0 343 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 HMSDA8MTL9 139 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 J3QT63 122 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 CD8AP01732 235 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 CXCL2P19875 107 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 ECI1P42126 302 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 PSG7Q13046 419 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 ZNF488Q96MN9 340 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 MICU1Q9BPX6 476 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 ZNF2Q9BSG1 426 aaPredicted RBP19.19■□□□□ 0.66
CDX1-201ENST00000231656 LIME1Q9H400 295 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 SPEF1Q9Y4P9 236 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 DPRXA6NFQ7 191 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 CLDN14O95500 239 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 SFT2D2O95562 160 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 OR5H8P0DN80 308 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 SELEP16581 610 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 GLRA1P23415 457 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 MPV17P39210 176 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 SUPT4H1P63272 117 aaKnown RBP19.19■□□□□ 0.66
CDX1-201ENST00000231656 FAM76BQ5HYJ3 339 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 LINC00596Q86U02 117 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 ZNF808Q8N4W9 903 aaPredicted RBP19.19■□□□□ 0.66
CDX1-201ENST00000231656 LINC01560Q8TB33 94 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 PLK3Q9H4B4 646 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 ZNF286AQ9HBT8 521 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 NGBQ9NPG2 151 aa19.19■□□□□ 0.66
CDX1-201ENST00000231656 FLNCQ14315 2725 aa19.18■□□□□ 0.66
CDX1-201ENST00000231656 MCRIP1C9JLW8 97 aa19.18■□□□□ 0.66
CDX1-201ENST00000231656 ATP6V1G2-DDX39BF2Z307 99 aa19.18■□□□□ 0.66
CDX1-201ENST00000231656 CCSO14618 274 aa19.18■□□□□ 0.66
CDX1-201ENST00000231656 SNAPC5O75971 98 aa19.18■□□□□ 0.66
CDX1-201ENST00000231656 PRKACAP17612 351 aa19.18■□□□□ 0.66
CDX1-201ENST00000231656 NFYAP23511 347 aaPredicted RBP19.18■□□□□ 0.66
CDX1-201ENST00000231656 SEC61A1P61619 476 aaKnown RBP19.18■□□□□ 0.66
CDX1-201ENST00000231656 NKX6-1P78426 367 aaPredicted RBP19.18■□□□□ 0.66
CDX1-201ENST00000231656 SLC22A25Q6T423 547 aa19.18■□□□□ 0.66
CDX1-201ENST00000231656 DHRS11Q6UWP2 260 aa19.18■□□□□ 0.66
CDX1-201ENST00000231656 ELMOD3Q96FG2 381 aa19.18■□□□□ 0.66
CDX1-201ENST00000231656 FAM208BQ5VWN6 2430 aa19.18■□□□□ 0.66
CDX1-201ENST00000231656 MYO18BQ8IUG5 2567 aa19.18■□□□□ 0.66
CDX1-201ENST00000231656 TRAV14DV4A0A0A6YYC5 116 aa19.17■□□□□ 0.66
CDX1-201ENST00000231656 LRP5LA4QPB2 252 aa19.17■□□□□ 0.66
CDX1-201ENST00000231656 RHBDL1O75783 438 aa19.17■□□□□ 0.66
CDX1-201ENST00000231656 RPS2P15880 293 aaKnown RBP19.17■□□□□ 0.66
CDX1-201ENST00000231656 BSPH1Q075Z2 132 aa19.17■□□□□ 0.66
CDX1-201ENST00000231656 ADAT1Q9BUB4 502 aaKnown RBP19.17■□□□□ 0.66
CDX1-201ENST00000231656 A0A0B4J2A0 478 aa19.16■□□□□ 0.66
CDX1-201ENST00000231656 ABCD4O14678 606 aa19.16■□□□□ 0.66
CDX1-201ENST00000231656 MPC2O95563 127 aa19.16■□□□□ 0.66
CDX1-201ENST00000231656 PGAM2P15259 253 aa19.16■□□□□ 0.66
CDX1-201ENST00000231656 IKZF1Q13422 519 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms