RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 AOC1P19801 751 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 NBL1P41271 181 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 SBSNQ6UWP8 590 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 FAM159AQ6UWV7 190 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 SARAFQ96BY9 339 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 ZC2HC1AQ96GY0 325 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 PMCHL2Q9BQD1 86 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 KATNBL1Q9H079 304 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 RNASE7Q9H1E1 156 aaKnown RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 RNF186Q9NXI6 227 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 TIMM10BQ9Y5J6 103 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 FGD6Q6ZV73 1430 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 EPRSP07814 1512 aaKnown RBP3.15□□□□□ -1.91
SCN1A-221ENST00000641996 NLRC5Q86WI3 1866 aa3.15□□□□□ -1.91
SCN1A-221ENST00000641996 SLC38A8A6NNN8 435 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 UPK3AO75631 287 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 TRGC2P03986 189 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 LIMS3P0CW19 117 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 LIMS4P0CW20 117 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 T-ENOLP0DO92 83 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 CD1DP15813 335 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 EN2P19622 333 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 TCF15Q12870 199 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 SFRP4Q6FHJ7 346 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 ARSGQ96EG1 525 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 HSD17B10Q99714 261 aaKnown RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 SEC61A2Q9H9S3 476 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 FGF20Q9NP95 211 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 ACER3Q9NUN7 267 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 BMPR1BO00238 502 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 HLA-AP01891 365 aaKnown RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 OR5AC1P0C628 307 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 PRDX3P30048 256 aaKnown RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 WNT7BP56706 349 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 C6orf141Q5SZD1 244 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 BPIFA4PQ86YQ2 179 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 OR5AP2Q8NGF4 316 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 OR4B1Q8NGF8 309 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 RNF11Q9Y3C5 154 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 HILPDAQ9Y5L2 63 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 PPIAL4DF5H284 164 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 SYNGR3O43761 229 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 FGF17O60258 216 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 TRACP01848 142 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 IGKV5-2P06315 115 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 ATF1P18846 271 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 PNPLA4P41247 253 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 PDLIM4P50479 330 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 GLDNQ6ZMI3 551 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 RBPMS2Q6ZRY4 209 aaKnown RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 RNF175Q8N4F7 328 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 HIST1H2ACQ93077 130 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 C1QTNF4Q9BXJ3 329 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 KDM6AO15550 1401 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 MYOM3Q5VTT5 1437 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 PARP14Q460N5 1801 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 EEF1E1-BLOC1S5C9J1V9 151 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 G3V3Q6 166 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 F2RL2O00254 374 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 DPM2O94777 84 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 HPXP02790 462 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 SRD5A2P31213 254 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 HERV-K104P61576 105 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 SLC23A3Q6PIS1 610 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 CLEC14AQ86T13 490 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 OR2M3Q8NG83 312 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 OR4K15Q8NH41 348 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 GLYATL1Q969I3 302 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 ANXA10Q9UJ72 324 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 A0A1B0GUL6 1792 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 USP9XQ93008 2570 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 EFCAB5A4FU69 1503 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 TSPAN11A1L157 253 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 OR2H2O95918 312 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 CFDP00746 253 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 MPV17LQ2QL34 196 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 DGAT2L7PQ6IED9 249 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 FAM214BQ7L5A3 538 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 NR2C2APQ86WQ0 139 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 TMEFF1Q8IYR6 380 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 PTGR2Q8N8N7 351 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 OR4F6Q8NGB9 312 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 SLC25A40Q8TBP6 338 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 TSACCQ96A04 125 aaPredicted RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 TNFRSF13CQ96RJ3 184 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 MS4A8Q9BY19 250 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 AKTIPQ9H8T0 292 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 AP5S1Q9NUS5 200 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 PLA2G3Q9NZ20 509 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 TSPOAP1O95153 1857 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 TRAV8-1A0A0A6YYK1 113 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 IRGMA1A4Y4 181 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 NAPSAO96009 420 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 POLR2J3Q9H1A7 115 aaKnown RBP3.14□□□□□ -1.91
SCN1A-221ENST00000641996 OR1A2Q9Y585 309 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 HCFC2Q9Y5Z7 792 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 MTCH2Q9Y6C9 303 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 hCG_1818297A0A087WSY0 165 aa3.14□□□□□ -1.91
SCN1A-221ENST00000641996 TRAV5A0A0B4J249 113 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms