RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 hCG_1809904A0A1W2PP81 198 aa17.03■□□□□ 0.32
CLN3-240ENST00000631023 A0A1W2PPE2 198 aa17.03■□□□□ 0.32
CLN3-240ENST00000631023 A0A1W2PR64 198 aa17.03■□□□□ 0.32
CLN3-240ENST00000631023 A0A1W2PRV1 198 aa17.03■□□□□ 0.32
CLN3-240ENST00000631023 MEGF11A6BM72 1044 aa17.03■□□□□ 0.32
CLN3-240ENST00000631023 RGS9O75916 674 aaPredicted RBP17.03■□□□□ 0.32
CLN3-240ENST00000631023 MAS1P04201 325 aa17.03■□□□□ 0.32
CLN3-240ENST00000631023 OR3A4PP47883 348 aa17.03■□□□□ 0.32
CLN3-240ENST00000631023 EDDM3BP56851 147 aa17.03■□□□□ 0.32
CLN3-240ENST00000631023 SCN1BQ07699 218 aa17.03■□□□□ 0.32
CLN3-240ENST00000631023 UNQ9370/PRO34162Q6UXP9 181 aa17.03■□□□□ 0.32
CLN3-240ENST00000631023 METTL9Q9H1A3 318 aa17.03■□□□□ 0.32
CLN3-240ENST00000631023 TMEM82A0PJX8 343 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 PIN1P1O15428 100 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 RRP9O43818 475 aaKnown RBP17.02■□□□□ 0.32
CLN3-240ENST00000631023 CSTBP04080 98 aaKnown RBP17.02■□□□□ 0.32
CLN3-240ENST00000631023 ZNF44P15621 663 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 CPEP16870 476 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 PSMA1P25786 263 aaKnown RBP17.02■□□□□ 0.32
CLN3-240ENST00000631023 HILS1P60008 231 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 GUCA2AQ02747 115 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 GRK1Q15835 563 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 TMEM200BQ69YZ2 307 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 C17orf107Q6ZR85 190 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 ZNF367Q7RTV3 350 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 BCL6BQ8N143 479 aaPredicted RBP17.02■□□□□ 0.32
CLN3-240ENST00000631023 SVOPQ8N4V2 548 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 JAGN1Q8N5M9 183 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 NKAIN3Q8N8D7 197 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 CHST4Q8NCG5 386 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 TCF7L1Q9HCS4 588 aa17.02■□□□□ 0.32
CLN3-240ENST00000631023 IGHV1-69DA0A0B4J2H0 117 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 MAGEA13PA6NCF6 341 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 SIRPB1O00241 398 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 MGST3O14880 152 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 DEGS1O15121 323 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 ZNF780AO75290 641 aaPredicted RBP17.02■□□□□ 0.31
CLN3-240ENST00000631023 CDRT1O95170 752 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 HTR3BO95264 441 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 OR2H2O95918 312 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 IGHV1-69P01742 117 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 LMO1P25800 156 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 NCR3LG1Q68D85 454 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 METAP1DQ6UB28 335 aaPredicted RBP17.02■□□□□ 0.31
CLN3-240ENST00000631023 BRD3OSQ6XYD6 125 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 CEACAM19Q7Z692 300 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 Q8N7P7 452 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 Q8NFD4 153 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 NR1H4Q96RI1 486 aaPredicted RBP17.02■□□□□ 0.31
CLN3-240ENST00000631023 ACOT13Q9NPJ3 140 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 SIRT7Q9NRC8 400 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 IL36GQ9NZH8 169 aa17.02■□□□□ 0.31
CLN3-240ENST00000631023 FBN1P35555 2871 aaKnown RBP17.01■□□□□ 0.31
CLN3-240ENST00000631023 RNF212BA8MTL3 300 aa17.01■□□□□ 0.31
CLN3-240ENST00000631023 PSPNO60542 156 aa17.01■□□□□ 0.31
CLN3-240ENST00000631023 PRTN3P24158 256 aa17.01■□□□□ 0.31
CLN3-240ENST00000631023 MEF2CQ06413 473 aaPredicted RBP17.01■□□□□ 0.31
CLN3-240ENST00000631023 GPR176Q14439 515 aa17.01■□□□□ 0.31
CLN3-240ENST00000631023 EDDM3AQ14507 147 aa17.01■□□□□ 0.31
CLN3-240ENST00000631023 INSL4Q14641 139 aa17.01■□□□□ 0.31
CLN3-240ENST00000631023 SIGLECL1Q8N7X8 197 aa17.01■□□□□ 0.31
CLN3-240ENST00000631023 OR51T1Q8NGJ9 327 aa17.01■□□□□ 0.31
CLN3-240ENST00000631023 TMEM203Q969S6 136 aa17.01■□□□□ 0.31
CLN3-240ENST00000631023 NKX3-1Q99801 234 aaPredicted RBP17.01■□□□□ 0.31
CLN3-240ENST00000631023 CHST6Q9GZX3 395 aa17.01■□□□□ 0.31
CLN3-240ENST00000631023 UNKLQ9H9P5 680 aaKnown RBP17.01■□□□□ 0.31
CLN3-240ENST00000631023 LRRC42Q9Y546 428 aa17.01■□□□□ 0.31
CLN3-240ENST00000631023 FUOMA2VDF0 154 aa17■□□□□ 0.31
CLN3-240ENST00000631023 VENTXO95231 258 aa17■□□□□ 0.31
CLN3-240ENST00000631023 TUSC1Q2TAM9 212 aa17■□□□□ 0.31
CLN3-240ENST00000631023 PHC2Q8IXK0 858 aa17■□□□□ 0.31
CLN3-240ENST00000631023 OR10K1Q8NGX5 313 aa17■□□□□ 0.31
CLN3-240ENST00000631023 PHYHIPQ92561 330 aa17■□□□□ 0.31
CLN3-240ENST00000631023 SLITRK2Q9H156 845 aa17■□□□□ 0.31
CLN3-240ENST00000631023 A0A0G2JK05 382 aa16.99■□□□□ 0.31
CLN3-240ENST00000631023 hADV38S2A0JD32 116 aa16.99■□□□□ 0.31
CLN3-240ENST00000631023 SC5DO75845 299 aa16.99■□□□□ 0.31
CLN3-240ENST00000631023 SRMP19623 302 aa16.99■□□□□ 0.31
CLN3-240ENST00000631023 SRSF2Q01130 221 aaKnown RBP16.99■□□□□ 0.31
CLN3-240ENST00000631023 EMX1Q04741 257 aaPredicted RBP16.99■□□□□ 0.31
CLN3-240ENST00000631023 IL13RA2Q14627 380 aa16.99■□□□□ 0.31
CLN3-240ENST00000631023 SLC22A6Q4U2R8 563 aa16.99■□□□□ 0.31
CLN3-240ENST00000631023 HSD17B12Q53GQ0 312 aa16.99■□□□□ 0.31
CLN3-240ENST00000631023 Q6P435 159 aa16.99■□□□□ 0.31
CLN3-240ENST00000631023 OSR2Q8N2R0 312 aa16.99■□□□□ 0.31
CLN3-240ENST00000631023 OR4S1Q8NGB4 309 aa16.99■□□□□ 0.31
CLN3-240ENST00000631023 MDFIQ99750 246 aa16.99■□□□□ 0.31
CLN3-240ENST00000631023 UQCC2Q9BRT2 126 aa16.99■□□□□ 0.31
CLN3-240ENST00000631023 TRIM77I1YAP6 450 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 ERP29P30040 261 aaKnown RBP16.98■□□□□ 0.31
CLN3-240ENST00000631023 OR3A1P47881 315 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 FAM27D1Q5T7N8 215 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 RUSC1-AS1Q66K80 236 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 PDZD9Q8IXQ8 264 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 ZFAND2BQ8WV99 257 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 MUL1Q969V5 352 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 FOXRED1Q96CU9 486 aaPredicted RBP16.98■□□□□ 0.31
CLN3-240ENST00000631023 ST3GAL6Q9Y274 331 aa16.98■□□□□ 0.31
CLN3-240ENST00000631023 MRPS28Q9Y2Q9 187 aaKnown RBP16.98■□□□□ 0.31
CLN3-240ENST00000631023 SLC33A1O00400 549 aaPredicted RBP16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms